Detailed information on CNT30125041


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 7e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3041845Physcomitrium patensChlamydomonas reinhardtii23.0641.0790.08131forward
CNT30482942Physcomitrium patensChara braunii33.6321.9886.39191forward
CNT30119392Physcomitrium patensCitrus clementina35.2121.7683200forward
CNT3040145Physcomitrium patensMarchantia polymorpha39.4418.5787.05224forward

Expression of CNT30125041

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MLSLVDFTVLRMVTRASEEPTLRESSFTGLSKLCPAKVVECMAVAAAMAATGFNTKQHTTQLSEGNANS

>peptide 2 (63 aa)
MGSVISPKDAVAGGLHGPAHGDAGLRGANLAGELVHGLEQALPSQGGGVHGGSGGHGCYRFQH*

>peptide 3 (36 aa)
MPRRCWRRGQPSGHSSSRVGLCRLRWPGRRIRTWRT*

>peptide 4 (43 aa)
MAWTKNPNMENIARRPFLISLTFNSANVSGSSAKPKGSNEPPG*

Sequence

>CNT30125041
CGACAGCTGAACCACAACCGAAAAAATCGAGCCTCCATGTGGCCCTATGATACAATCCACTAGGGCAATGCTCAGGGCATTCTCAATTCTGATTTTGATC
TAATTCCCGGGAACAAAGTTGGTTGCGTATGCCCAGGCGTTGTTGGCGACGGGGTCAGCCAAGTGGTCATTCAAGTTCTCGAGTGGGCCTTTGCCGGTTA
CGATGGCCTGGACGAAGAATCCGAACATGGAGAACATAGCGAGACGGCCGTTCTTAATCTCCTTGACCTTCAACTCAGCGAATGTGTCGGGGTCATCAGC
CAAACCCAAGGGGTCAAATGAGCCTCCGGGGTAGATGGGGTCGGTGATCTCACCCAAGGATGCTGTCGCTGGTGGACTTCACGGTCCTGCGCATGGTGAC
GCGGGCCTCAGAGGAGCCAACCTTGCGGGAGAGCTCGTTCACGGGCTTGAGCAAGCTCTGCCCAGCCAAGGTGGTGGAGTGCATGGCGGTAGCGGCGGCC
ATGGCTGCTACAGGTTTCAACACTAAGCAACACACCACACAACTTTCAGAGGGTAACGCGAACTCGAC