Detailed information on CNT3040145


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 1e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30125041Marchantia polymorphaPhyscomitrium patens18.5739.4487.05224forward

Expression of CNT3040145

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MRGMVELQKSWRIFICSTKRSAGRERRWTWRG*

>peptide 2 (33 aa)
MGSTTSPKGPPATLYPSMARVTEVVQTSLSEDL*

>peptide 3 (37 aa)
MDVAGVKGIGYLIISSEPMRPDATSYHVAVQSSCDSP*

>peptide 4 (38 aa)
MSLATRSFLACRPKLFSRASLACPYRMPLLPHPRISDLF

>peptide 5 (29 aa)
MSLRGRWGRRHHPKDLLLLCIPRWLELPR*

>peptide 6 (54 aa)
MRFPVAPSDIVVLSFHVSGHSFVPRMSPEAVLPRFIGLPLSHAAPATSTNLRPLS

>peptide 7 (50 aa)
MGPFPVTIAWTKNPNMENMASLPFFSSLTFSSAKVSGSSAKFRGSNEPPG*

>peptide 8 (79 aa)
MAHRAWITSNSRFLAKVSGSAENRYQMEAGAAAFEVLRMTTRASPTFTFWVRALPDRPKACPTKVDAETAVAAMLTRRR*

>peptide 9 (65 aa)
MLRAITWLFNPHAIPRSPFGYCGFVLSCLWPLVRSSHVARSCSPALHWPAPIACRSCHIHESPTSF

>peptide 10 (93 aa)
MASHLLASSKCLISQLKDFRLVSGGEGGGVGPGVVGNGVSQVVGQVLDGTLSGNDSLDEESEHGEHGEPSVLQLLDLQLSEGVWVLSQVQGVE*

Sequence

>CNT3040145
AATGAGATAGATTTATTAGAGAAGGCGAATCACAGGAGCTACTCCAGGTAGCGATTGGCAGCTTTGAAGTAACCTACGAAGCAACTATATACACCTGGTG
CCGACGGACTTTTGAGTTCCATGGCAAGCCATCTCCTCGCCAGCTCCAAATGCCTAATCTCACAGCTGAAGGATTTTCGTCTAGTTTCCGGGGGTGAAGG
TGGTGGCGTAGGCCCAGGCGTTGTTGGCAACGGGGTCAGCCAAGTGGTCGGACAGGTTCTCGATGGGACCCTTTCCGGTAACGATAGCCTGGACGAAGAA
TCCGAACATGGAGAACATGGCGAGCCTTCCGTTCTTCAGCTCCTTGACCTTCAGCTCAGCGAAGGTGTCTGGGTCCTCAGCCAAGTTCAGGGGGTCGAAT
GAGCCTCCGGGGTAGATGGGGTCGACGACATCACCCAAAGGACCTCCTGCTACTCTGTATCCCTCGATGGCTCGAGTTACCGAGGTAGTCCAAACCTCCC
TCAGCGAAGATCTGTGATCCAGCCTTGAACCACACTGCCTCTCCGAACTTCACACCGTTCTTGGCCAACAACTCGGGGAAGACGCATCCCAGAGCTCCCA
ACATGGCCCATCGAGCGTGGATCACCTCCAATTCACGGTTCTTGGCGAAGGTCTCGGGGTCAGCAGAGAATCGTTACCAGATGGAGGCGGGGGCGGCGGC
CTTCGAGGTCTTGCGCATGACAACGCGGGCCTCACCAACATTCACCTTCTGGGTGAGGGCATTGCCGGACAGGCCCAAAGCCTGTCCAACGAAGGTGGAT
GCGGAGACGGCGGTGGCGGCCATGCTGACTAGAAGGCGGTGAGAGGAGGTGAAGTGTTCGAGTATGAGAGGAATGGTTGAGTTGCAGAAAAGCTGGAGAA
TCTTTATATGTTCGACTAAACGGAGTGCAGGTAGAGAGCGTAGATGGACGTGGCGGGGGTAAAAGGGATAGGATATCTGATAATATCGAGTGAGCCAATG
AGGCCAGATGCTACGAGCTATCACGTGGCTGTTCAATCCTCATGCGATTCCCCGTAGCCCCTTCGGATATTGTGGTTTTGTCCTTTCATGTCTCTGGCCA
CTCGTTCGTTCCTCGCATGTCGCCCGAAGCTGTTCTCCCGCGCTTCATTGGCCTGCCCCTATCGCATGCCGCTCCTGCCACATCCACGAATCTCCGACCT
CTTTCT