Detailed information on CNT30117160


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520716Oryza nivaraSetaria italica22.4512.685.8699forward
CNT30554397Oryza nivaraOryza glaberrima102.0476.6696.89450forward
CNT30370729Oryza nivaraOryza glumipatula99.5582.3699.54439forward
CNT30102709Oryza nivaraOryza rufipogon102.0480.3696.89450forward
CNT30576919Oryza nivaraOryza barthii90.793.02100400forward
CNT30581069Oryza nivaraEchinochloa crusgalli22.911.8886.14101forward

Expression of CNT30117160

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MVLWRVEVFVLEMVWVMLSGWLSSCLAVADDVATALRQSGDDVSG*

>peptide 2 (40 aa)
MPAFVVWFLCVFVSIYTHCNCVYIRMLFYFFFVRHDLRQIK

Sequence

>CNT30117160
TTCTTATCCCCCCTTCTGCTTAGAGCTATGTGAGATCCAAATTTCCAGGTACTCCATAAAAATGGCCAAAGTTCTACACTACTAAAGCAACAAGAGCAAG
GGCACTTCCCAATTATCCCCAACCTCTTTTTGGTGTGATTTGATGGTGCTTTGGAGGGTGGAGGTGTTCGTGTTGGAGATGGTGTGGGTGATGCTCAGCG
GCTGGCTCTCCTCCTGCCTCGCCGTCGCCGACGACGTCGCCACGGCGCTCAGGCAGAGTGGTGACGACGTCTCCGGCTAGAATTTCTTTGGACGAACTGG
ATATAAATCATCTTCCATGCCTGCATTTGTTGTTTGGTTTCTTTGTGTGTTTGTGAGCATTTATACACATTGCAATTGTGTATATATCCGAATGTTATTT
TATTTTTTTTTTGTACGACATGATTTGAGGCAAATTAAAAT