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Detailed information on CNT30554397

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30370729	Oryza glaberrima	Oryza glumipatula	90.12	99.25	97.73	529	forward
CNT30102709	Oryza glaberrima	Oryza rufipogon	95.4	100	99.64	560	forward
CNT30576919	Oryza glaberrima	Oryza barthii	75.13	102.56	97.28	441	forward
CNT30117160	Oryza glaberrima	Oryza nivara	76.66	102.04	96.89	450	forward

Expression of CNT30554397

Peptides detected in this lncRNA

>peptide 1 (42 aa)
YNFVPLLQLSSTPAIPYPPFCLELCEIQISRYSIKMAKVLHY*

>peptide 2 (45 aa)
MVLWRVEVFVLEMVWVMLRGWLSSCLAVADDVATALRQSGDDVSG*

Sequence

>CNT30554397
TTATAACTTTGTACCTTTGCTACAACTATCTTCAACCCCTGCAATTCCTTATCCCCCCTTCTGCTTAGAGCTATGTGAGATCCAAATTTCCAGGTACTCC
ATAAAAATGGCCAAAGTTCTACACTACTAAAGCAACAAGAGCAAGGGCACTTCCCAATTATCCCCAACTTCGTTTCTAGCTCTTTTTGGTGTGATTTGAT
GGTGCTTTGGAGGGTGGAGGTGTTCGTGTTGGAGATGGTGTGGGTGATGCTCAGAGGCTGGCTCTCCTCCTGCCTCGCCGTCGCCGACGACGTCGCCACG
GCGCTCAGGCAGAGTGGTGACGACGTCTCCGGCTAGAATTTCTTTGGACGAACTGGATATAAATCATCTTCCATGCCTGCATTTGTTGTTTGGTTTCTTT
GTGTGTTTGTGAGCATTTATACACATTGCAATTGTGTATATATCCGAATGTTATTTTAATTTTTTTTGTACGACATGATTTGAGGCAAATTAAAATAGAT
TGCAATGGATATTTCTCAAATTATCTCAACTGGTCGGTCAGTAGAAGACTAGATTACTTCCAAAGAGCTAAGAATATAGATATGTCA