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Detailed information on CNT30370729


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554397Oryza glumipatulaOryza glaberrima99.2590.1297.73529forward
CNT30102709Oryza glumipatulaOryza rufipogon97.9493.2197.7522forward
CNT30576919Oryza glumipatulaOryza barthii80.68100100430forward
CNT30117160Oryza glumipatulaOryza nivara82.3699.5599.54439forward

Expression of CNT30370729

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MVLWRVEVFVLEMVWVMLSGWLSSCLAVADDVATALRQSGDDVSG*

Sequence

>CNT30370729
TGATGTTTGATAGGTTTATAACTTTGTACCTTTGCTACAACTATCTTCAACCCCTGCAATTCCTTATCCCCCCTTCTGCTTAGAGCTATGTGAGATCCAA
ATTTCCAGGTACTCCATAAAAATGGCCAAAGTTCTACACTACTAAAGCAACAAGAGCAAGGGCACTTCCCAATTATCCCCAACCTCTTTTTGGTGTGATT
TGATGGTGCTTTGGAGGGTGGAGGTGTTCGTGTTGGAGATGGTGTGGGTGATGCTCAGCGGCTGGCTCTCCTCCTGCCTCGCCGTCGCCGACGACGTCGC
CACGGCGCTCAGGCAGAGTGGTGACGACGTCTCCGGCTAGAATTTCTTTGGACGAACTGGATATAAATCATCTTCCATGCCTGCATTTGTTGTTTGGTTT
CTTTGTGTGTTTGTGAGCATTTATACACATTGCAATTGTGTATATATCCGAATGTTATTTTAATTTTTTTTGTACGACATGATTTGAGGCAAATTAAAAT
AGATTGCAATGGATATTTCTCAAATTATCTCAA