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Detailed information on CNT3099546


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30181660Oryza rufipogonSecale cereale10.1836.4686.67105forward
CNT30585367Oryza rufipogonEchinochloa crusgalli7.5726.4487.1878forward

Expression of CNT3099546

Peptides detected in this lncRNA

>peptide 1 (51 aa)
DEIWHNLSLFWMKFGITLVITTTFLYIFPGATKNTTYKFSTLHDRSTSPHI*

>peptide 2 (84 aa)
MYLTLSLNAPNRRCFSPWWRGTWWCSCHRSYRSHSASSDSKSLSSNGIAAHSSTAAMAIKAATTARTLQLLITLPMIDRSPLIN*

>peptide 3 (93 aa)
MAPARSLGFLGAKGAPWRDTIWRELDGVGGFHGDAAEAAVVAGVALHPDVAALAPGCAPRVLDDPVLRAVVGRWRGTRRTWRGTPLCPCRRSG*

Sequence

>CNT3099546
GGATGAAATTTGGCATAACCTTAGTCTTTTTTGGATGAAATTTGGCATAACCTTAGTCATAACAACAACCTTCTTATATATATTTCCCGGTGCCACGAAG
AACACCACATATAAGTTCAGTACATTACATGATAGATCGACCTCACCTCACATCTAAAACTTATTTAGCACACACGAAATAACACTAGTAACTTAGACGA
TTTCAGGTAATTCTTTTCCCTGATCGCCTCACACGAATTACATAAACACAAGGCAATTAACAAAGAGCAGCAACAATAATAGCACCATTTTGCAAGCTGG
AGGAGGAGACGCGACCAGAGCCGTTGATCCAGGCTCGTAGGCGGGCACGTGTACGGCGGAGATGGCGCCGGCTCGATCACTGGGTTTCCTTGGCGCCAAG
GGCGCGCCTTGGCGTGACACGATTTGGCGAGAACTTGACGGGGTAGGAGGCTTCCATGGCGATGCCGCAGAGGCCGCCGTCGTAGCCGGAGTCGCGCTGC
ATCCGGATGTAGCCGCCCTCGCCCCAGGCTGTGCCCCACGAGTTCTTGACGATCCAGTACTCCGTGCCGTCGTTGGTCGTTGGCGTGGGACCCGGCGAAC
GTGGCGCGGAACTCCTCTCTGCCCATGTCGCCGAAGCGGTTGAGCCGGAGGCGGTAGCCCCGGCCGCCGCGCTTGTTGTGCTCGTGGATGTACCTCACGT
TGTCCTTGAACGCGCCGAACCGGCGGTGCTTCTCGCCGTGGTGGCGCGGCACGTGGTGGTGCTCCTGCCACCGCTCGTACAGATCCCACAGCGCCTCGTC
GGACTCCAAATCCCTCTCGTCGAACGGTATCGCGGCGCACAGCTCCACCGCCGCCATGGCCATCAAAGCAGCCACCACCGCAAGAACCCTCCAGCTGCTA
ATAACCCTCCCCATGATCGATCGATCGCCACTAATTAATTAACTTTGCAACCGATCGATCGCAGTAGCAGTGGACTAGCTGCTCGTCGTGATCAGCTAGT
TCTTGGGAGGGATTGGAATTGGAGGGTGAGG