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Detailed information on CNT3096548


BLAST search results

BLAST vs Swiss-Prot:
sp|P26600|PAL5_SOLLC, E-value = 4e-124

BLAST vs NONCODE:
NONVVIT002503, E-value = 5e-41

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30162463Solanum tuberosumPistacia vera10.2527.5292.9671forward
CNT30358787Solanum tuberosumLactuca sativa32.7661.0279.3227forward

Expression of CNT3096548

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MTARMLESNRTIDAIPEPTAVPFTSASPSLGCNSKNPPVTPATRNASSALSFSPFGPTALELGLPVSKPAM*

>peptide 2 (52 aa)
MELLSCLDIRAAIQNVFHNSSSLNLTRVMLQLVCQIVSEFGLSIHHFSENRR*

>peptide 3 (33 aa)
APAAEPLWRCSESITILLWFLKRIPFHGASELP*

>peptide 4 (29 aa)
AGGGATVEMFGEHNDLALVFEEDPISWSF*

Sequence

>CNT3096548
GCGCCGGCGGCGGAGCCACTGTGGAGATGTTCGGAGAGCATAACGATCTTGCTTTGGTTTTTGAAGAGGATCCCATTTCATGGAGCTTCTGAGCTGCCTT
GACATAAGAGCTGCCATCCAAAATGTGTTCCATAATAGCAGCAGCCTCAATCTGACCAGGGTGATGCTTCAACTTGTGTGTCAAATAGTCAGTGAATTCG
GGCTTTCCATTCATCACTTCAGCGAAAATCGCCGATAAAACTTCAGACATGACAGCAAGAATGTTGGAATCAAACAGGACCATTGATGCCATACCAGAAC
CAACTGCTGTACCATTCACAAGTGCAAGTCCTTCTTTAGGCTGCAACTCGAAAAATCCACCAGTAACACCAGCCACGCGGAACGCTTCCTCAGCATTAAG
TTTCTCACCATTTGGTCCAACAGCCTTGGAGTTAGGCCTGCCAGTGAGCAAACCAGCAATGTAGGAAAGAGGGACAAGATCACCCGAGGCAGTGATTGTG
CCACGGAGGGGCAAACACGGGGTGATGTTGCTGTTGATCAACTTAGTAATTGCTTCCAAGATTTCAAATCTAATGCCAGAGTAGCCTTGAAGCAGAGTGT
TGATCCTAACAAGCATAGCTGCCCTTGTTGCTGAATGTGGTAAATGTGAGATGATTCTGTTCCATTCCCAAAAACTCCGGCATTCAAGAACCT