Detailed information on CNT3081191


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374024Brassica junceaArabidopsis thaliana19.722.3388.89144forward
CNT30310634Brassica junceaCamelina sativa18.631.9286.03136forward
CNT3060739Brassica junceaArabidopsis lyrata21.0720.2687.66154forward
CNT30612361Brassica junceaArabis alpina21.4833.6286.62157forward
CNT30480686Brassica junceaArabidopsis halleri22.7122.3487.95166forward

Expression of CNT3081191

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MGRSSTQASQGYSSGQFLHCVSNLVSLEKKKEIHLLPLQL*

>peptide 2 (55 aa)
VSIYNLKQFILDYTLYYTTSLEIVQYIIHNKREHQIKKIVVGRSMRFFRLKSNES*

>peptide 3 (86 aa)
MLLLLRVAYVFDGQRNKEMSLPLVLSIYSLLRFRRQKTSSPSSQPQSFSLTSFPFCVCVKITIDILKTLLDFQKEKCKQSNKESRY*

>peptide 4 (81 aa)
MTILCNSGRKREKMRRKEKEKSKEENHHNHHQCCCYCVSPTFSMVRGIKRCLFLSCYPFIRCLGFEDRRHRHHLHNHNHFL*

Sequence

>CNT3081191
GTTTCAATATATAATCTAAAACAATTCATACTTGATTATACTCTATACTATACTACAAGTCTAGAAATCGTGCAATACATAATACACAACAAAAGAGAGC
ATCAAATAAAAAAAATCGTGGTTGGTCGGAGCATGAGGTTCTTCCGTCTGAAAAGCAACGAGAGCTAAGACATAGCGGAGTGACACGTGGCCTGATGTTG
AAAGCTCCCTATGGGGAGAAGTAGTACACAAGCCTCCCAAGGATATTCTTCAGGACAATTTCTCCACTGCGTTTCAAACCTTGTCTCTTTGGAGAAGAAG
AAAGAGATTCATCTTCTTCCTCTTCAACTCTGAGATTTGATCTGAAAACCAGAGACGATGACAATCTTGTGCAACAGTGGCCGCAAAAGAGAAAAGATGA
GAAGAAAAGAGAAAGAAAAGTCGAAAGAAGAGAATCACCATAATCATCATCAATGTTGTTGTTATTGCGTGTCGCCTACGTTTTCGATGGTCAGAGGAAT
AAAGAGATGTCTCTTCCTCTCGTGTTATCCATTTATTCGTTGCTTAGGTTTCGAAGACAGAAGACATCGTCACCATCTTCACAACCACAATCATTTTCTT
TGACTTCTTTTCCTTTTTGTGTATGTGTGAAGATTACTATAGATATCTTGAAAACACTTCTTGATTTTCAGAAAGAAAAGTGTAAACAATCAAATAAGGA
ATCAAGATATTGAAATGTTTATGGTTACGGC