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Detailed information on CNT30374024


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30310634Arabidopsis thalianaCamelina sativa22.6434.2793.84146forward
CNT3060739Arabidopsis thalianaArabidopsis lyrata44.0337.3791.2284forward
CNT3081191Arabidopsis thalianaBrassica juncea22.3319.788.89144forward
CNT30612361Arabidopsis thalianaArabis alpina24.0333.1990.97155forward
CNT30480686Arabidopsis thalianaArabidopsis halleri39.5334.3290.98255forward

Expression of CNT30374024

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MSILCNNGRKRDKRRGRRKEKETTIEETHQCCCCCVWPPFSMVRGIKRCFFLSCYPFIRCLGLEERRHRHHLHHHNHFL*

>peptide 2 (48 aa)
MFLPLMLSIYSMFRIGREKTSSSSSSPQPLFMIPFVYKDYYRACENIS*

>peptide 3 (47 aa)
MTRVMMLKASMETYKSPEETISPLRLDFRLSLSVSRRRKRFIIFSHH*

Sequence

>CNT30374024
AAAACATATAAAATAAAAAACATAAAAAAGATTGGTAGGTTTGGTCCGATCTAAAGTAATGAGAACGGAGACACATATGAAATGACACGTGTTATGATGT
TGAAAGCTTCCATGGAGACGTACAAGTCTCCGGAGGAGACAATTTCTCCTCTGCGTCTCGACTTTCGACTCTCTCTCTCTGTCTCTCGGAGAAGAAAGAG
ATTCATCATCTTCTCTCACCATTAATCTTCCTTGCCAAAGATTTTCGAGCCCATTCATAAGATTCCGGTGAATTTTCCGAGAAACGATGTCAATATTGTG
CAACAATGGCCGCAAAAGAGATAAGAGAAGAGGAAGAAGAAAAGAGAAAGAAACAACGATAGAAGAGACTCATCAATGTTGTTGTTGTTGCGTGTGGCCT
CCATTTTCAATGGTTAGAGGAATAAAGAGATGTTTCTTCCTCTCATGTTATCCATTTATTCGATGTTTAGGATTGGAAGAGAGAAGACATCGTCATCATC
TTCATCACCACAACCACTTTTTATGATTCCTTTTGTGTATAAAGATTACTATAGGGCATGTGAAAACATTTCTTGATTTCAAGAAAAACATGTAAAATAA
TCAAATAAGGAATCAAGACACAATGAAAACGTTTCATGGTTAGGG