Detailed information on CNT30612361


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374024Arabis alpinaArabidopsis thaliana33.1924.0390.97155forward
CNT30310634Arabis alpinaCamelina sativa30.8433.888.89144forward
CNT3060739Arabis alpinaArabidopsis lyrata33.1920.3990.97155forward
CNT3081191Arabis alpinaBrassica juncea33.6221.4886.62157forward
CNT30480686Arabis alpinaArabidopsis halleri33.1920.8691.61155forward

Expression of CNT30612361

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MMINVVVVACGLRFQWLEELKDVFSSHVIHLFVV*

>peptide 2 (64 aa)
RRTSLLRSIFFEENFSSAFSTYLNFSLGEEREIYLLLSPYTSILLPKHFHAIHKIPVNFPATNP*

>peptide 3 (66 aa)
DVQVSSEVYSLKKISPLRFLLISTSLSEKKERSIFFSHLTHQSYYQNISMPFTRFRSIFRLQIPKI*

>peptide 4 (80 aa)
MSLLCNTGRKRDKRRRKEKERTKELKNHDDQCCCCCVWPSFSMVRGIKRCFFLSCYPFIRCLGFEDRRHLHHPHHQNHFL*

Sequence

>CNT30612361
AGACGTACAAGTCTCCTCCGAAGTATATTCTTTGAAGAAAATTTCTCCTCTGCGTTTTCTACTTATCTCAACTTCTCTCTCGGAGAAGAAAGAGAGATCT
ATCTTCTTCTCTCACCTTACACATCAATCTTATTACCAAAACATTTCCATGCCATTCACAAGATTCCGGTCAATTTTCCGGCTACAAATCCCTAAGATTT
GATTGAAACCTAAGAAAGATGTCACTCTTGTGCAACACCGGTCGTAAAAGAGACAAGAGAAGAAGAAAAGAGAAAGAAAGAACTAAAGAGTTAAAGAATC
ATGATGATCAATGTTGTTGTTGTTGCGTGTGGCCTTCGTTTTCAATGGTTAGAGGAATTAAAAGATGTTTTTTCCTCTCATGTTATCCATTTATTCGTTG
TTTAGGTTTTGAAGATAGAAGACATCTTCATCATCCTCATCACCAAAACCATTTTCTATGACTCTTT