CANTATAdb - search

Detailed information on CNT3080322

BLAST search results

BLAST vs Swiss-Prot:
sp|P13851|CB21_SINAL, E-value = 4e-138

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30539883	Brassica juncea	Brassica napus	96.34	81.84	93.92	658	forward
CNT30480878	Brassica juncea	Arabidopsis halleri	42.02	66.13	88.85	287	forward

Expression of CNT3080322

Peptides detected in this lncRNA

>peptide 1 (93 aa)
TNTKPFPHSHSNFEKTEANYKLIKLRSLSGNEVGGEGPCVVVDWISQMVSEILQRSLTSDNGLNEESKHREHSQSSVLDLLHLQLCKSLWVGS*

>peptide 2 (42 aa)
HKHKTLSSLSLEFRKDRSKLQTDKTSLTFRERSWWRRPMRCC*

>peptide 3 (30 aa)
MGRSCLLDKASPRPLPMVPLRRLCNPQQLP*

>peptide 4 (29 aa)
MAHLQWITSSSRFLANVSGSAERPAVSHP*

Sequence

>CNT3080322
TCACAAACACAAAACCCTTTCCTCACTCTCACTCGAATTTCGAAAAGACAGAAGCAAATTACAAACTGATAAAACTTCGCTCACTTTCCGGGAACGAAGT
TGGTGGCGAAGGCCCATGCGTTGTTGTTGACTGGATCAGCCAAATGGTCAGCGAGATTCTCCAACGGTCCCTTACCAGTGACAATGGCTTGAACGAAGAA
TCCAAACATAGAGAACATAGCCAATCTTCCGTTCTTGATCTCCTTCACCTTCAACTCTGCAAAAGCCTCTGGGTCGGTAGCTAGGCCCAATGGGTCGAAG
CTGCCTCCTGGATAAAGCAAGTCCTCGGCCTCTCCCAATGGTCCCTCTCCGGCGACTCTGTAACCCTCAACAGCTCCCATGAGGATCACCTGAGTGGCCC
AAATGGCTAAGATGCTCTGAGCGTGAACCAAGCTTGGGTTTCCCAAGGCTCCAAGCATGGCCCACCTGCAGTGGATAACTTCTAGCTCACGGTTCCTTGC
AAATGTCTCGGGATCGGCTGAGAGACCGGCAGTGTCCCATCCGTAGTCACCTGGGAACTCTCCGGTAAGGTAGCTCGGTGGCTCGCCGGAGAATGGACCC
AAGTACTTGACTCTTTCGGAACCGTACCATGGGCTGCCTGATGGTCCCTTTGGCTTGGCGACAGTCTTCCTCATCGTCACACG