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Detailed information on CNT30539883


BLAST search results

BLAST vs Swiss-Prot:
sp|P04778|CB1C_ARATH, E-value = 2e-146

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3080322Brassica napusBrassica juncea81.8496.3493.92658forward

Expression of CNT30539883

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHLQWITSSSRFLANVSGSAERPAVSHP*

>peptide 2 (30 aa)
MGRSCLLGIASPLLLPMVPLRRLCNPQQLP*

>peptide 3 (63 aa)
MGCLIVPLAWRRSSSLSHGRFQGLLMLQEKASRPFQRRQGRREPLLKRPLKFLLFLFFFVTNL*

>peptide 4 (99 aa)
QTQTLSLEFKKTEANYKIKLRSLSGNEVGGEGPSVVVDWISQMVSKVLQRSLTSDNGLNKESKHREHSQSSVLDLLHLQLGESLWVGSKAQWVEAASWV*

Sequence

>CNT30539883
CACAAACACAAACCCTCTCACTCGAATTCAAAAAGACTGAAGCAAATTACAAAATAAAACTTCGCTCACTTTCCGGGAACGAAGTTGGTGGCGAAGGCCC
AAGCGTTGTTGTTGACTGGATCAGCCAAATGGTCAGCAAGGTTCTCCAACGGTCCCTTACCAGTGACAATGGCTTGAACAAAGAATCCAAACATAGAGAA
CATAGCCAATCTTCCGTTCTTGATCTCCTTCACCTTCAACTCGGCGAAAGCCTCTGGGTCGGTAGCAAGGCCCAATGGGTCGAAGCTGCCTCCTGGGTAT
AGCAAGTCCTCTGCTTCTCCCAATGGTCCCTCTCCGGCGACTCTGTAACCCTCAACAGCTCCCATGAGGATCACCTGAGTGGCCCAAATGGCTAAGATGC
TCTGAGCGTGGACTAAGCCCGGGGCTCCAAGCATGGCCCACCTGCAGTGGATAACTTCTAGCTCACGGTTCCTTGCGAATGTCTCGGGATCGGCTGAGAG
GCCTGCGGTGTCCCATCCGTAGTCTCCTGGGAACTCTCCGGTAAGGTAGCTCGGTGGCTCGCCAGAGAATGGACCCAAGTACTTGACTCTTTCGAAACCG
TACCATGGGCTGCCTGATTGTCCCTTTGGCTTGGCGACGGTCTTCCTCATTGTCACACGGCCGCTTCCAAGGACTTCTGATGCTGCAGGAGAAAGCTTCA
CGGCCTTTCCAGCGAAGGCAGGGGAGGAGAGAGCCATTGTTGAAGAGGCCATTGAAGTTTCTTCTTTTTCTTTTTTTTTTTGTGACTAACTTGTGAGTGA
GAGT