Detailed information on CNT30480878


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZ87|CB1B_ARATH, E-value = 1e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30538972Arabidopsis halleriBrassica napus66.3633.6186.11288forward
CNT30313761Arabidopsis halleriCamelina sativa50.4626.294.98219forward
CNT3080322Arabidopsis halleriBrassica juncea66.1342.0288.85287forward
CNT30611567Arabidopsis halleriArabis alpina38.4843.1582.63167forward

Expression of CNT30480878

Peptides detected in this lncRNA

>peptide 1 (29 aa)
LPFLSSFTFNSAKASGSVAKPNGSKLPPG*

>peptide 2 (48 aa)
MGRSYHRGKANPRPLPTAHFLRLCSLQRLPLRSLVWPKSPKCSERGPS*

>peptide 3 (51 aa)
SVLELLHLQLSEGLWVGSQTQWVEATTGVKQILGLSQRPISCDSVAFNGSH*

>peptide 4 (53 aa)
MAHLLWITSSSRFLANVSGTSDAAGESLTAFPAKAGEERAMVEAAIEVECSTK*

Sequence

>CNT30480878
CTTCCGTTCTTGAGCTCCTTCACCTTCAACTCAGCGAAGGCCTCTGGGTCGGTAGCCAAACCCAATGGGTCGAAGCTACCACCGGGGTAAAGCAAATCCT
CGGCCTCTCCCAACGGCCCATTTCCTGCGACTCTGTAGCCTTCAACGGCTCCCATTAAGATCACTTGTGTGGCCCAAATCGCCAAAATGCTCTGAGCGTG
GACCAAGCTAGGGTTTCCCAAGGCTCCGAGCATGGCCCACCTGCTGTGGATAACTTCTAGCTCACGGTTCCTTGCGAATGTCTCGGGGACGTCTGATGCC
GCGGGGGAAAGCTTGACGGCCTTTCCGGCGAAGGCAGGGGAGGAGAGAGCCATGGTTGAGGCGGCCATTGAGGTTGAGTGTAGCACAAAGTAAAACGTTT
AAGAGTTGTTGTTGTAAGCCAAGAAATGGGTGGT