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Detailed information on CNT30727193


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 1e-43

BLAST vs NONCODE:
NONCQUT001608, E-value = 5e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514845Corchorus capsularisJuglans regia24.2741.1681.29417forward
CNT30378225Corchorus capsularisArabidopsis thaliana22.0657.7783.11379forward

Expression of CNT30727193

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MILMKDSGYSFLASSSSFNTWDESVHPNMGSFHMVQ*

>peptide 2 (36 aa)
MILMKDSGYSFLASSSSFNTWDESVHPNMGSFHMVH*

>peptide 3 (45 aa)
MRESRTSSSQVVAIPKFTNFNKLDSNFIQLNLKLSFEIHHLILRI*

>peptide 4 (56 aa)
MSQCTRTWEVSTWSSSVHRSTLGSCGSYGRRIRATQGNTKFNISKKQRKKRECKLN*

>peptide 5 (66 aa)
MFNCSNCCAYIYAYLHASNSATIADDGGDVFVVLAGGGESRGRLEANEWGDHGGLCGGGTANDGGG*

>peptide 6 (78 aa)
MHTCMHRTLPPLLTMEVMSLLFLRVVGKAEADLRPTNGATMEACAGEARLTTVADDIIEEAIASTPYAKGLCTNIIST*

>peptide 7 (35 aa)
MENDLQFEFQARNPSRAEKVVYFLSQLHGGEIREV*

Sequence

>CNT30727193
AACATATATAGTTTACATTGAGAAATCACACATGAATTTCAAAGATCTCTTAAGATGGAAGAACCATAAGTAAAACAAATACAACCAAGTAAAGCAAATA
TATAGTTGGAGAACTTAAAATACAGAGAAAAGGGTTCATAAAATATATGGCAAGGAACTAGTATCTTTATTATTCATTAAGTTCTCAGCCGTTCCATTGG
AAATCAAAAACCCAGAATTCAAAAAAACAAAGGACAATACCTCAAAAAGAAAGGAAAAGTAAAAAGGTTTCGACAAATGCTAAGTACAATTTAAACAAGC
CGAATCCCTACAATGTGGGGAAAACAACTCTGTTCATTTAAGCTGAGGTGAAGCTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGCACTTGACGCTT
GTTGTCGAATCCAATGATTCTGATGAAGGACTCGGGGTATTCCTTCTTGGCCTCCTCAAGCTCCTTCAACACCTGGGATGAGTCGGTGCACCCGAACATG
GGAAGTTTCCACATGGTCCACTGAGGTGAAGCTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGCACTTGACGCTTGTTGTCGAATCCAATGATTCTG
ATGAAGGACTCGGGGTATTCCTTCTTGGCCTCCTCAAGCTCCTTCAACACCTGGGATGAGTCAGTGCACCCGAACATGGGAAGTTTCCACATGGTCCAGT
AGCGTCCATCGTAGTACCCTGGGGAGCTGTGGTTCTTACGGTAGACGAATCCGTGCTACACAAGGCAATACCAAATTCAATATCAGCAAAAAACAGAGAA
AAAAAAGAGAGTGTAAATTAAACTAAGTTTAGTTATAGAGAGAGCATGGAAAATGGAAAATGACCTCCAATTCGAATTCCAAGCAAGGAATCCATCCAGA
GCGGAGAAGGTAGTCTACTTCCTTAGCCAATTGCACGGGGGTGAGATCCGGGAGGTATGAGAGAGTCTCGAACTTCTTCTTCCCAAGTGGTGGCCATACC
TAAATTCACCAATTTCAACAAATTGGATTCAAATTTCATCCAATTGAATTTGAAATTGTCATTTGAAATTCATCATCTTATACTACGTATATGAAATATT
TAATCATAATTGCTTCCCCTACTTGAATCTGTGATATCTGATATGTCTCAATTTCTGATTAACTAAGACCCAATAATGTAGTTACCGTATATCAGGAGTT
TCGTACACAATTTATTTATATATATGGGGGTATGTGCATTTCTTCCTATTAGGTAATATATATAAATGAGATCCAAATTCAAATCTAAAATCTACATTTT
CCCAAACATAGCATGACAAATTGAAAGAATTTAGCTTTGCTAATTAAAGCTTTAATATGTCATTTTATGTTCAATTGTAGTAATTGTTGTGCATATATAT
ATGCATACCTGCATGCATCGAACTCTGCCACCATTGCTGACGATGGAGGTGATGTCTTTGTTGTTCTTGCGGGTGGTGGGGAAAGCAGAGGCAGACTTGA
GGCCAACGAATGGGGCGACCATGGAGGCCTGTGCGGGGGAGGCACGGCTAACGACGGTGGCGGATGACATCATTGAGGAAGCCATTGCTAGTACTCCTTA
TGCTAAAGGACTATGTACTAATATAATCAGTACTTAATAGTGATTCTGCCCAACTGCCAATACCCCCTATATATAATGAAAAACTTTGGCCATCTCATAT
CCTATGGTTACAACATTT