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Detailed information on CNT30378225


BLAST search results

BLAST vs Swiss-Prot:
sp|P10795|RBS1A_ARATH, E-value = 2e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727193Arabidopsis thalianaCorchorus capsularis57.7722.0683.11379forward
CNT3074853Arabidopsis thalianaBrassica juncea85.8292.384.55563forward

Expression of CNT30378225

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MEASTLSSTVHRSIRECFRAHGTQIRAINT*

Sequence

>CNT30378225
ATTTTCAAACTAGTTAACCATCGGAAAAAATCAAGACGCACGGATATATAAATTACATATTCATAAATCAGACATTTGACAATCCGATAGAAATTGTCTC
ATAAAGAGAAAAAGAACACAGACAATAGGAAATGAAATGAGCAGAGATAATTCATAAGAATGTTTTAGAAAAGAAATTAAGCTTCGGTGAAGCTTGGGGG
CTTGTAGGCAATGAAACTGATGCATTGGACTTGACGGGTGTTGTCGAATCCGATGATCCTAATGAAGGCGCCCGGGTACTCCTTCTTGCATTCTTCAACT
TCCTTCAACACTTGAGCGGAGTCGGTGCATCCGAACAATGGAAGCTTCCACATTGGAGTGAAGCTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGGA
CTTGACGGGTGTTGTCGAATCCGATGATCCTAATGAAGGCGCCCGGGTACTCCTTCTTGCATTCTTCAACTTCCTTCAACACTTGAGCGGAGTCGGTGCA
TCCGAACAATGGAAGCTTCCACATTGTCCAGTACCGTCCATCGTAGTATCCGGGAGTGTTTCCGTGCTCACGGTACACAAATCCGTGCTATAAACACATA
AGAAAACCATTCAATACAATTGATATTGGAGGATATGCACAAGGTGATATAGTCTA