« Back to Corchorus capsularis search


Detailed information on CNT30727191


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 5e-46

BLAST vs NONCODE:
NONCQUT001608, E-value = 3e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30629523Corchorus capsularisVigna unguiculata41.4846.8979.46370forward
CNT30620550Corchorus capsularisCajanus cajan20.0714.9486.59179forward

Expression of CNT30727191

Peptides detected in this lncRNA

>peptide 1 (30 aa)
WFLSVIIFMNISDITFFSQFPHLIHLNEHI*

>peptide 2 (36 aa)
MILMKDSGYSFLASSSSFNTWDESVHPNMGSFHMVQ*

>peptide 3 (36 aa)
MILMKDSGYSFLASSSSFNTWDESVHPNMGSFHMVQ*

>peptide 4 (47 aa)
MSQCTRTWEVSTWSSSVHRSTLGSCGSYGRRIRATQGNTKFNISKKQR

>peptide 5 (63 aa)
MSQCTRTWEVSTWSSSVHRSEAWGLVGNETDALHLTLVVESNDSDEGLGVFLLGLLKLLQHLG*

Sequence

>CNT30727191
CTGGTTTTTATCAGTGATCATTTTCATGAACATTTCTGATATTACATTTTTTTCCCAATTCCCCCACTTAATTCATCTTAATGAACATATATAGTTTACA
TTGAGAAATCACACATGAATTTCAAAGATCTCTTAAGATGGAAGAACCATAAGTAAAACAAATACAACCAAGTAAAGCAAATATATAGTTGGAGAACTTA
AAATACAGAGAAAAGGGTTCATAAAATATATGGCAAGGAACTAGTATCTTTATTATTCATTAAGTTCTCAGCCGTTCCATTGGAAATCAAAAACCCAGAA
TTCAAAAAAACAAAGGACAATACCTCAAAAAGAAAGGAAAAGTAAAAAGGTTTCGACAAATGCTAAGTACAATTTAAACAAGCCGAATCCCTACAATGTG
GGGAAAACAACTCTGTTCATTTAAGCTGAGGTGAAGCTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGCACTTGACGCTTGTTGTCGAATCCGATGA
TTCTGATGAAGGACTCGGGGTATTCCTTCTTGGCCTCCTCAAGCTCCTTCAACACCTGGGATGAGTCAGTGCACCCGAACATGGGAAGTTTCCACATGGT
CCAGTAGCGTCCATCGTAGTGAAGCTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGCACTTGACGCTTGTTGTCGAATCCAATGATTCTGATGAAGG
ACTCGGGGTATTCCTTCTTGGCCTCCTCAAGCTCCTTCAACACCTGGGATGAGTCAGTGCACCCGAACATGGGAAGTTTCCACATGGTCCAGTAGCGTCC
ATCGTAGTACCCTGGGGAGCTGTGGTTCTTACGGTAGACGAATCCGTGCTACACAAGGCAATACCAAATTCAATATCAGCAAAAAACAGAGA