Detailed information on CNT30722018


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 2e-96

BLAST vs NONCODE:
NONMEST001181, E-value = 5e-75

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30299711Triticum speltaTriticum aestivum10082.66100658forward
CNT30665960Triticum speltaTriticum dicoccoides100.6182.8598.94662forward

Expression of CNT30722018

SRR9114152: 1.34 RPKM

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MARHLLATTETEHQVEGGLLLDVVVSEGAAVLELLTSKDEALLVRWDALLVLDLRLHIVNGVR*

>peptide 2 (61 aa)
MRRCWSGGMPSLSWIFAFTLSMVSDDSTSSVMVLPVRVLTKICIPPLRRSTRWRVDSFWML*

>peptide 3 (60 aa)
QGSLIHSFHSSSKSAAVRKFTDTTKHKYITLDHSTVATKHKTRRGHTDNPIGGHRKATDL*

>peptide 4 (35 aa)
MRRCWSGGMPSLSWIFALTLSIVSEDSTSRVMVLPV

>peptide 5 (29 aa)
FRAHLFIHFTVHPNLLRSESSRTQPNIST*

Sequence

>CNT30722018
TTCAGGGCTCACTTATTCATTCATTTCACAGTTCATCCAAATCTGCTGCGGTCAGAAAGTTCACGGACACAACCAAACATAAGTACATAACACTAGACCA
CAGCACGGTAGCAACAAAGCACAAGACCAGACGAGGACACACTGACAATCCGATCGGAGGACACAGAAAGGCAACCGACTTGTGAGCCCACAGACATAAG
CAGCTCCATGGCCAGGCACTTACTGGCCACCACGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTC
CTCGAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCAGATGAC
TCGACCTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATACCACCCCTGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGA
TGTTGTAGTCAGCGAGGGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGC
CTTGACATTGTCAATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTG