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Detailed information on CNT30720143


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30178164Triticum speltaSecale cereale60.7453.5596.69362forward
CNT30435425Triticum speltaAegilops tauschii5048.77100298forward

Expression of CNT30720143

SRR9114152: 170.59 RPKM

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MVLPVRVFTKICILAAVGGRLRALRRRRRRRGRVWVGGRSGG

>peptide 2 (48 aa)
WNGLKAFRLIAYGHQNLSTHRITAVGDEIFRKHDTQGFSLNDKRDTSK*

Sequence

>CNT30720143
TGGAATGGATTAAAAGCATTTAGACTGATAGCATACGGACACCAAAATTTAAGCACGCATCGCATAACAGCAGTAGGCGATGAAATATTCAGGAAACATG
ATACTCAAGGATTCAGTTTAAACGACAAACGGGACACATCTAAATGAGTTCGACTCTCGATAGGTAGGTAGGTAAAAGAGCAGAGCAAACGCAAGCCACC
TCTAAGCCTTCTGGTTGTAGACGTAGGTGAGGCCGCACTTGCCGCAGTAGTGGCGGTCGAAGTGGTTGGCCATGAAGGTGCCGGCGCCGCAGTCGGCGTT
CGGGCACTCCTTCCTGAGCCTGGTGACCTTGCCGGTGGCGTCGTCGACCTTGTAGAACTGGAGGACGGCGAGCTTCACCTTCTTGTGCTTGTGCTTTTGC
TTCTTGGGCTTGGTGTAGGTCTTCTTCTTGCGCTTCTTGGCGCCGCCGCGGAGGCGGAGCACCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGA
TCTGCATCTTGGCGGCGGTGGGAGGTCGCCTCCGCGCGCTGCGTCGGCGACGGCGGCGGCGGGGTAGGGTTTGGGTTGGGGGGCGGAGTGGAGGCT