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Detailed information on CNT30178164


BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 2e-41

BLAST vs NONCODE:
NONSTUT000620, E-value = 9e-15

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693384Secale cerealeOryza sativa31.3642.495.75212forward
CNT30518633Secale cerealeJuglans regia53.9985.2886.3365forward
CNT30285916Secale cerealeTriticum aestivum60.2166.6197.3407forward
CNT30385127Secale cerealeTriticum turgidum28.42.9494.27192forward
CNT30553804Secale cerealeOryza glaberrima31.3635.1695.75212forward
CNT30435385Secale cerealeAegilops tauschii82.195.8598.02555forward
CNT30241998Secale cerealeAvena sativa42.0135.8695.77284forward
CNT30656187Secale cerealeTriticum dicoccoides59.9160.3697.28405forward
CNT30130551Secale cerealeLolium perenne41.5741.2696.44281forward
CNT30605213Secale cerealeGossypium raimondii40.3890.488.28273forward
CNT3067544Secale cerealeLeersia perrieri38.4615.8195.38260forward
CNT30720143Secale cerealeTriticum spelta60.6568.7997.07410forward
CNT30341903Secale cerealeEragrostis tef40.5332.4695.62274forward
CNT30367865Secale cerealeSorghum bicolor72.1990.290.16488forward
CNT30580001Secale cerealeEchinochloa crusgalli61.6957.1294.72417forward
CNT30594254Secale cerealeEragrostis curvula40.5333.0596.72274forward

Expression of CNT30178164

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSSVMVLPVRVFTKICILAAVGGRLRALRRRRWRRGRVWVG

>peptide 2 (45 aa)
LKAFRLIAYGHQNLSTHRITAVGDEIFRKHNTQGFSLNDKQDTSK*

Sequence

>CNT30178164
TTAAAAGCATTTAGACTGATAGCATACGGACACCAAAATTTAAGCACGCATCGCATTACAGCAGTAGGCGATGAAATATTCAGGAAACATAATACTCAAG
GTTTCAGTTTAAACGACAAACAGGACACATCTAAATGAGTTCGATTCTCGACGGGTAGGTAAAAGAGCAGAGCAAACGCAAGCCACCTCTAAGCCTTCTG
GTTGTAGACGTAGGTGAGGCCGCACTTGCCGCAGTAGTGGCGGTCGAAGTGGTTGGCCATGAAGGTGCCGGCGCCGCAGTCGGCGTTGGGGCACTCCTTC
CTGAGCCTGGTGACCTTGCCGGTGGCGTCGTCGACCTTGTAGAACTGGAGGACGGCGAGCTTCACCTTCTTGTGCTTGTGCTTTTGCTTCTTGGGCTTGG
TGTAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGC
CCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTG
CATCTTGGCGGCGGTGGGAGGTCGCCTCCGCGCGCTGCGGCGGCGACGGTGGCGGCGGGGTAGGGTTTGGGTTGGG