Detailed information on CNT30712577


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FY14|TIP1_MEDTR, E-value = 1e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677491Glycine maxSetaria viridis14.6420.2387.1470forward
CNT3084635Glycine maxVigna radiata60.8836.9389.35291forward

Expression of CNT30712577

Peptides detected in this lncRNA

>peptide 1 (41 aa)
SDSTTDERPGPVDPVVGPGPAHDSRPKCHSGVHGRSREAGR*

>peptide 2 (63 aa)
MAAPEKLGDDVDDAAEEGDVAADEGAEGDGGVDGECMGDGGGDEAGRGGSAVVGELVVGDAGA*

>peptide 3 (45 aa)
MPRRKVMLPPTKAPKVTAGLTANAWAMEAEMRPAGVAAPLSVSLL*

Sequence

>CNT30712577
AGCGATTCCACCACCGATGAGAGGCCCGGCCCAGTAGATCCAGTGGTTGGTCCAGGTCCAGCTCACGACAGCAGGCCCAAATGTCACAGCGGGGTTCATG
GCCGCTCCAGAGAAGCTGGGCGATGACGTAGACGATGCCGCGGAGGAAGGTGATGTTGCCGCCGACGAAGGCGCCGAAGGTGACGGCGGGGTTGACGGCG
AATGCATGGGCGATGGAGGCGGAGATGAGGCCGGCAGGGGTGGCAGCGCCGTTGTCGGTGAGCTTGTTGTAGGCGATGCCGGAGCCTGAGCCGGCGAACA
CGAAGATGAAGGTTGAGATGAACTCAGCCAAAGCCGCCTTCAACGTGTCGGGGTGAGTCGCCTCTTCAGGCCTTCCGACGGCGATGTTTCTGATCGGCAT
CTTCTTCAATTGACGCTGACGATTATGATGAGATCAAGTGAACACCGATCACTCACTGAAATCACTCTCTGTTTCGCT