Detailed information on CNT30677491


BLAST search results

BLAST vs Swiss-Prot:
sp|O64964|TIP11_MAIZE, E-value = 4e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514098Setaria viridisJuglans regia20.8118.1884.7272forward
CNT30712577Setaria viridisGlycine max20.2314.6487.1470forward
CNT30568703Setaria viridisActinidia chinensis21.974.5992.1176forward
CNT30662885Setaria viridisTriticum dicoccoides22.5434.2196.1578forward
CNT30721484Setaria viridisTriticum spelta22.8310.8196.279forward
CNT30706776Setaria viridisPrunus avium16.4720.591.2357forward
CNT30322744Setaria viridisAsparagus officinalis24.5725.1590.5985forward
CNT30176366Setaria viridisVigna angularis20.2314.6188.5770forward

Expression of CNT30677491

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MPRKRVMLPPTKAPKAMPEPWPAKTKMRVEMNSANAALRAPGW

>peptide 2 (30 aa)
PCERAQRRSSVHDYTVMMMGGDAKHAMREN*

>peptide 3 (56 aa)
MQSTRCEKTNQTAASTDQTDGTGRCARRRRRRLPKPQLSSRCPAAGRSSTGCRGRG*

Sequence

>CNT30677491
CCATGCGAGCGGGCGCAGCGGCGGAGTTCGGTTCATGACTACACGGTGATGATGATGGGCGGCGATGCAAAGCACGCGATGCGAGAAAACTAATCAAACG
GCGGCGAGCACTGATCAAACGGACGGAACCGGCCGCTGCGCGCGACGTCGTCGACGGCGGCTACCGAAGCCTCAGCTTAGTAGTCGGTGCCCAGCAGCTG
GGCGATCCAGTACAGGATGCCGCGGAAGAGGGTGATGTTGCCGCCGACGAAGGCGCCGAAGGCCATGCCGGAGCCCTGGCCGGCGAAGACGAAGATGAGG
GTGGAGATGAACTCAGCGAACGCCGCCTTGAGGGCACCCGGGTGGT