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Detailed information on CNT30520395


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 1e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30629897Setaria italicaVigna unguiculata31.6313.6383.83167forward
CNT30710734Setaria italicaGlycine max33.7129.1883.15178forward

Expression of CNT30520395

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MVAGTKQPSSFLRPGRCLRRGRRGGRAGRSTGRPGRGCCPRRRRRGR*

>peptide 2 (31 aa)
MRKPSTRPMRMTWKPSTARMLCACTRLGLPR*

>peptide 3 (36 aa)
KCKEAATCIDRKSAVQHIICFRSTQATTDREHNAHS*

Sequence

>CNT30520395
TGAAATGCAAAGAGGCAGCTACATGTATAGATCGTAAATCAGCAGTTCAGCACATCATCTGTTTCAGGAGCACACAAGCCACAACTGACAGAGAGCATAA
TGCACATTCCTGAATCCTGAGAACAAGGTATTTGCATTAATTGGTGGTACAAAAGTAACGAGTAGTCTACAATGGTGGCAGGCACGAAGCAGCCGTCTAG
CTTCTTAAGACCCGGGCGTTGTTTGCGACGGGGTCGTCGAGGTGGCCGAGCGGGTCGAAGTACTGGCCGCCCGGGTAGAGGTTGTTGCCCTCGCCGACGC
CGTCGAGGCCGTTGATGCGGAAGCCCTCGACGAGGCCCATGAGGATGACCTGGAAGCCCAGCACGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTT
GCCCAGGTAGTCCAGCCCGCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACGGGCTCCTTGAAGTCCACGCGCACCCACTTCTCGAGCACCTCG
GGCGTGATGCAGCCCAGCGCGCCCAGCA