CANTATAdb - search

Detailed information on CNT30708285

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 1e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30628941	Glycine max	Vigna unguiculata	89.09	100.18	89.03	547	forward
CNT30171601	Glycine max	Trifolium pratense	43.97	47.2	81.85	270	forward

Expression of CNT30708285

Peptides detected in this lncRNA

>peptide 1 (39 aa)
DDLFSISPIMLLLASDALLAEVTNSDDEVSFLASLFINV*

>peptide 2 (46 aa)
MFDKIQLAVELDELCHHPFRLLIGFQGEEEVVVEQMVLRWKDLHLW*

Sequence

>CNT30708285
TGATGATCTATTCTCAATTTCACCAATCATGTTGCTCCTAGCATCAGATGCATTACTTGCTGAAGTAACTAATAGTGATGATGAAGTATCCTTCTTAGCC
TCCCTTTTCATCAATGTTTGATAAAATTCAACTAGCTGTGGAGCTCGATGAACTTTGTCACCATCCATTCCGCCTCTTGATAGGCTTCCAGGGGGAGGAG
GAGGTGGTGGTGGAGCAGATGGTACTTCGTTGGAAGGATTTGCATTTGTGGTAACAGCAGCAGCAGCACCACCACCAGATGGCTTAGGAGGAGGTCTAGG
CACCCTAGTAGGCCTTTTCTCAATGTGAGCAAGCTTCATCTTGCTAATACTTTGATTATCAACATTCTTTCCATCATCAGATTGCTCATTCGGAGTGCCA
GAAACAACTGGTTTCTCCTTTATTTGAGTAAGCTTCGGTGGCAAAGATATAGTACTTCCTCTTTCAGGCTTGGTCATATTCAAACCTGAATTGTCACCAA
ACCTCAGCACTCTTGCTTTCTCAGCCTTTTCTTTAAGTTGTTTTTCCCTTGCCAGGGCCAACTTGTGGCGATCTTTGTACACAGGATACTTCTCATCCAG
AGCTCCATCAACTG