Detailed information on CNT30696236


BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 3e-41

BLAST vs NONCODE:
NONBNAT005965, E-value = 1e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30385127Oryza sativaTriticum turgidum65.743.6288.56236forward
CNT30456592Oryza sativaSaccharum spontaneum61.8427.0191.44222forward
CNT30580715Oryza sativaEchinochloa crusgalli62.9546.593.81226forward

Expression of CNT30696236

Peptides detected in this lncRNA

>peptide 1 (37 aa)
AVATLLLAAVGGPEGKACIAPAGEDSASRRLGSIPLG*

>peptide 2 (44 aa)
MRRCWSGGIPSLSWILALTLSMVSLLSTSSVIVFPVSVFTKICIL

Sequence

>CNT30696236
TTGCTGTGGCCACACTTCTTCTTGCGGCAGTTGGTGGACCTGAGGGGAAGGCGTGCATAGCACCTGCAGGAGAAGACAGTGCCTCGCGGAGGTTGGGCTC
GATCCCCTTGGGGTAGCCGCCCCTGCTGCCACCGCGGAGGCGGAGCACCAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCCAGGGTGCGGCCA
TCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCCGGCGGGATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGCTGC
TCTCCACCTCCAGCGTGATCGTCTTCCCGGTGAGCGTCTTCACGAAGATCTGCATCTTG