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Detailed information on CNT30580715


BLAST search results

BLAST vs Swiss-Prot:
sp|P49636|RL40_NICSY, E-value = 2e-51

BLAST vs NONCODE:
NONBNAT005965, E-value = 2e-39

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696236Echinochloa crusgalliOryza sativa46.562.9593.81226forward
CNT30649899Echinochloa crusgalliRosa chinensis45.4731.6291.86221forward
CNT30326410Echinochloa crusgalliAsparagus officinalis45.8818.690.13223forward

Expression of CNT30580715

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MRRCWSGGMPSLSWILALTLSMVSLLSTSRVIVFPVRVFTKICIFSIGLGRLCTMAVLVW

Sequence

>CNT30580715
TGCGCAAGGGAAGACCAGACCGTACGTGAACAATCCAAAGTTAGGCCACGCATGATGTGAATCTATAAAGAAGAAAGAAATGAACGCGAGATCGATTATA
AAGAAGAAATAATTGAACGCGAGATCGATCAACAAAGAAAGCTCATCGATCGATCAGGGGCGCACGTACTTGCGGCAGACCATCTTCTTCTCATTATACT
TCTGCGCGAGCTCGCGGAGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGC
GAAAATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCGAGGGTGATC
GTCTTCCCGGTCAGGGTCTTCACGAAGATCTGCATCTTCTCGATCGGCCTTGGTCGACTTTGCACAATGGCAGTTTTGGTTTGGTG