« Back to Saccharum spontaneum search


Detailed information on CNT30456592


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ARZ9|R27AA_ORYSJ, E-value = 4e-89

BLAST vs NONCODE:
NONSTUT000620, E-value = 3e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696236Saccharum spontaneumOryza sativa27.0161.8491.44222forward
CNT30674447Saccharum spontaneumSetaria viridis23.4828.9896.37193forward
CNT30523034Saccharum spontaneumSetaria italica23.644.3997.94194forward
CNT30316655Saccharum spontaneumCorylus avellana26.0367.9491.59214forward
CNT30628786Saccharum spontaneumVigna unguiculata26.6444.6990.87219forward
CNT30178120Saccharum spontaneumSecale cereale26.8924.7294.57221forward
CNT30285265Saccharum spontaneumTriticum aestivum26.8929.3995.48221forward
CNT30220676Saccharum spontaneumHordeum vulgare27.2539.7995.09224forward
CNT30586129Saccharum spontaneumMusa acuminata27.0141.7390.99222forward
CNT30435195Saccharum spontaneumAegilops tauschii27.2538.6994.64224forward
CNT30241998Saccharum spontaneumAvena sativa26.8927.995.02221forward
CNT30655772Saccharum spontaneumTriticum dicoccoides27.2527.4595.09224forward
CNT30130551Saccharum spontaneumLolium perenne27.2532.8995.09224forward
CNT3067544Saccharum spontaneumLeersia perrieri27.0113.594.59222forward
CNT30720017Saccharum spontaneumTriticum spelta26.8926.7695.48221forward
CNT30338860Saccharum spontaneumEragrostis tef27.2527.2595.98224forward
CNT30368046Saccharum spontaneumSorghum bicolor27.2536.7295.54224forward
CNT30369422Saccharum spontaneumOryza glumipatula27.8617.5196.07229forward
CNT30576569Saccharum spontaneumOryza barthii27.2518.5195.09224forward
CNT30580001Saccharum spontaneumEchinochloa crusgalli30.4134.2596250forward
CNT30497500Saccharum spontaneumDigitaria exilis33.4518.5896275forward
CNT30116662Saccharum spontaneumOryza nivara27.259.9295.09224forward
CNT30594254Saccharum spontaneumEragrostis curvula27.2527.0295.54224forward

Expression of CNT30456592

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MSRCWSGGMPSLSWILAFTLSMVSEDSTSSVMVFPVRVFTKICILAGAPYSGGGRPYLSEVSRLRRRDGAAVCVGGD*

Sequence

>CNT30456592
AGCCGAGAATCGCAACATGGAATGAAAACATAGTTTAAGATTATAACCCAAACATAACTCGAATTCAACAGTGAGTGCTTGACAGGACCCATAACGACAT
GATATCAGCAAAAACAGAAGTTTCATCGCCATAAGAGAGAGATGCAGGTGTTCTGTTCCAAGAAACTACTAACACGCGACAAAACAAAAGAGAAGATTAT
CACCTAGCGAGACTTTCCATTTCCCTTCTTTCTCTACGCCTGCTGGTTGTAGACGTAGGTGAGGCCGCACTTACCGCAGTAGTGGCGGTCGAAGTGGTTG
GCCATGAAGACCCCGGCGCCGCACTCGGCGTTGGGGCACTCCTTGCGGAGGCGGGTGACCTTGCCGGTGGCGTCGTCCACCTTGTAGAACTGGAGCACGG
CGAGCTTCACCTTCTTGTGCTTGTGCTTGATCTTCTTGGGCTTGGTGTACGTCTTCTTCTTGCGCTTCTTGGCGCCTCCCCTCAGGCGGAGCACCAGGTG
CAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATGCCC
TCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCA
TCTTGGCAGGCGCGCCCTACTCCGGCGGCGGCCGCCCTTACCTGAGTGAGGTTTCTCGCCTGCGGCGGCGGGATGGGGCTGCTGTGTGTGTGGGCGGCGA
CTAGGGTTTAGGAGGAGAGAGA