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Detailed information on CNT30694185


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30105339Oryza sativaOryza longistaminata62.5866.1593.14510forward
CNT30102144Oryza sativaOryza rufipogon98.7796.52100805forward
CNT30604271Oryza sativaOryza punctata94.2370.6589.58768forward

Expression of CNT30694185

Peptides detected in this lncRNA

>peptide 1 (32 aa)
LHFADHCHHLLWGQHVLQLDLTQLILECQEKS*

>peptide 2 (40 aa)
MTIIHLLLFSFHIIFLRTSHIHSSTFTLQTIAIFCKSVLI*

>peptide 3 (48 aa)
MSALPSISPCTASSATLDGSLLSSPVSLPTSCTLSCSSLEDASSAIMVF

>peptide 4 (51 aa)
MTRRASGNIINQLLLNFHNIFLRTRHINSSTFTLQTIAIILCGGSMFCGLA*

Sequence

>CNT30694185
CTTCACTTTGCGGACCATTGCCATCATCTTCTGTGGGGGCAGCATGTTCTGCAGCTTGATTTAACTCAGCTGATTCTAGAGTGTCAGGAGAAAAGCTAGA
TGGGCCTCTAGAAATACCGTCAAACTGGTCTTCAACTTCCATATTATCTTCCTTGGAACAAGGCACATCAACAGCAGTACCTTCACTTTGGAGACAATTG
CCATGATCTTCTGTGGGGGCAGTATGTTCTGCAGGCTGATTTGACTCAGTTGATTTTAAAGCAACAGGCAAATGACTAGAAGGGCTTCCGGAAATATCAT
CAATCAGCTTCTCCTCAACTTCCATAATATCTTCCTTAGAACCAGACACATCAACAGTAGTACCTTCACATTGCAGACCATTGCCATCATCTTGTGTGGG
GGCAGCATGTTCTGTGGGCTGGCTTGACTCAGTTGATTGTAAAGCAGCGGGCAAATGACTATCATCCATCTGCTTCTCTTCAGCTTCCATATCATCTTCC
TTAGAACCAGTCACATCCACAGTAGTACCTTCACGTTGCAGACCATTGCCATCTTCTGCAAGAGTGTCCTTATCTGAGGGATCAAAAGGTATTTGGCTGT
CAGCTATAGTAGCCACAGTAGAATTGTTGATTTCTGCTTCGGAACTACCAGCAATTATTTGACTGTCCATGTCAGCACTGCCATCAATTTCACCTTGCAC
TGCATCTTCTGCCACACTAGATGGAAGTTTATTATCATCACCAGTTTCATTACCTACTTCATGCACCTTATCATGTTCATCACTGGAAGATGCAAGCTCT
GCCATAATGGTCTTT