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Detailed information on CNT30604271


BLAST search results

BLAST vs Swiss-Prot:
sp|P31568|YCF2_OENPI, E-value = 2e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694185Oryza punctataOryza sativa70.6594.2389.58768forward
CNT30105339Oryza punctataOryza longistaminata72.59102.3392.27789forward
CNT30102144Oryza punctataOryza rufipogon73.3295.5689.71797forward

Expression of CNT30604271

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MTRRASGNIINLLLFNFHDIFLRTSHINSSTFTLQTIVIILCGGSMFCGLV*

>peptide 2 (44 aa)
MISSLEPATSTVVPSHCRPLSSSCVGAACSVGWFDSVDCKAAGK*

>peptide 3 (46 aa)
MTRGAPRNIIHLLLFSFHIIFLRTSHIHSSTFTLQTVAIFCKSVLI*

>peptide 4 (37 aa)
LKPYCEHHHLSVNRLHLLLGHHSFPRFHLPFQVHSHM*

Sequence

>CNT30604271
CCTGAAGCCATATTGTGAGCATCATCATTTGTCTGTAAACAGGCTTCATCTGCTACTTGGGCACCACTCTTTTCCAAGGTTTCATCTGCCTTTTCAAGTT
CATTCACACATGTAAATTTGGGGCCACTTAGTGTGGCATGGGAGGAAACAACAGATGCGTCCACAGCACCACTATTATCTACATATTCTTGCTCTGCAGG
CTGATTTGGAGTCAACTGTAAAACATCAGGCAAAAGACTAGACGAGCCTCTAGAGGTATCATCAATCTTCTCTTCGACTTCCATATTGTCCTCCTTAGAA
CCAGCCACATCAACAGCAGTACCTTCACTTTGCAGACCATTGCCATCATCTTCTGTGGGGGCAGCATGTTCTGCAGGTTGATTTAATTCAGCTGATTCTA
AGGCGCCAGGCAGAAAGCTAGATGAACCTCTAGAGATATCAATCTGTTTTTCTTCAACTTCCATATCATCTTTCTTGGAATCAACCACATGAACAGCAGT
AACTTCATTTTGCAGACCATCGCCATCATCTTCTGTGGGGGCAGCATGTTCTGCAGGCTGATTTGACTCAGTTGATTGTAAACCAGCAGGCAAATGACTA
GAAGGGCTTCCGGAAATATCATCAATCTGCTTCTCTTCAACTTCCATGATATCTTCCTTAGAACCAGCCACATCAACAGTAGTACCTTCACATTGCAGAC
CATTGTCATCATCTTGTGTGGGGGCAGCATGTTCTGTGGGCTGGTTTGACTCAGTTGATTGTAAAGCAGCGGGCAAATGACTAGAGGAGCCCCTAGAAAT
ATCATCCATCTGCTTCTCTTCAGCTTCCATATTATCTTCCTTAGAACTAGTCACATCCACAGCAGTACCTTCACGTTGCAGACCGTTGCCATCTTCTGCA
AGAGTGTCCTTATCTGAGGGGTCAAAAGGTAGTTGGCTGTCAGCTATAGTAGCCACAGTAGAATCATTGCTTTCTGCTTCAGAACTACAAGCAATCATTT
GACCGTCCATGTCAGCACTGCTACCAATTTCACCCTGCACTGCATCTTCTGCCACACTGGATGGAAGTTTATTATCATCACAAGTTT