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Detailed information on CNT30105339


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694185Oryza longistaminataOryza sativa66.1562.5893.14510forward
CNT30102144Oryza longistaminataOryza rufipogon69.9164.6393.51539forward
CNT30604271Oryza longistaminataOryza punctata102.3372.5992.27789forward

Expression of CNT30105339

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MTRRASGNIINQLLLNFHNIFLRTRHINSSTFTLQTIAIILCGGSMFCGLA*

>peptide 2 (36 aa)
MGHGRKQQMCSRHHYYLNTLALHADLESTVKHQAND*

>peptide 3 (50 aa)
MTRRASRDIINLLFDFYIVLLRTSHINRSAFTLRTIAIIFCGGSMFCRLI*

>peptide 4 (47 aa)
ASLVSKVSSAFSSSFTHVNLGPLNGAWEETTDVFTSSLLSKHSCSAR*

Sequence

>CNT30105339
GGGCATCACTCGTTTCCAAGGTTTCATCTGCCTTTTCAAGTTCTTTCACACATGTAAATTTGGGGCCACTTAATGGGGCATGGGAGGAAACAACAGATGT
GTTCACGTCATCACTATTATCTAAACACTCTTGCTCTGCACGCTGATTTGGAGTCGACTGTAAAACATCAGGCAAATGACTAGACGAGCCTCTAGAGATA
TCATCAATCTTCTCTTCGACTTCTATATTGTCCTCCTTAGAACCAGCCACATCAACAGAAGTGCCTTCACTTTGCGGACCATTGCCATCATCTTCTGTGG
GGGCAGTATGTTCTGCAGGTTGATTTAATTCAGCTGATTCTAAAGCACCAGGCAGAAAGCTAGATGAGCCTCTAGAGATATCAATCTGCTTTTCTTCAAC
TTCCATATCATCTTTCTTGGAATCAACCACATCAACAGCGGTACCTTCGCTTTGCAGACCATCGCCATCATCTTCTGCGGGGACAGCATGTTCTGCAGGC
TGATTTGACTCAGTTGATTTTAAAGCAACAGGCAAATGACTAGAAGGGCTTCCGGAAATATCATCAATCAGCTTCTCCTCAACTTCCATAATATCTTCCT
TAGAACCAGACACATCAACAGTAGTACCTTCACATTGCAGACCATTGCCATCATCTTGTGTGGGGGCAGCATGTTCTGTGGGCTGGCTTGACTCAGTTGA
TTGTAAAGCAGCGGGCAAATGACTATCATCCATCTGCTTCTCTTCAGCTTCCATATCATCTTCCTTAGAAC