Detailed information on CNT30690196


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370768Oryza sativaOryza glumipatula20.2612.0687.82156reverse complement
CNT30575718Oryza sativaOryza barthii20.396.6389.17157reverse complement

Expression of CNT30690196

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MIKVDTSADNIVCVVTWKPFVLPYKSQMLL*

>peptide 2 (35 aa)
STDVLKISIKHLQPHLHWPRWSIAAVPRPSDRAVL*

>peptide 3 (31 aa)
MTYIVKRRKYHFVTKIYLLRNNLASKNLLYC*

>peptide 4 (41 aa)
MRIFPSSAHDKGGHFSGQHCLRGHLETFCTTIQITNAFVKK*

>peptide 5 (44 aa)
QQMFSRFRSSISSPIFIGLVGRLPPSRGPATEQSSDIPLQIPQA*

>peptide 6 (81 aa)
INRCSQDFDQASPAPSSLASLVDCRRPAAQRPSSPLISHSKSLRRSNRDGTNNIMDDAFCTYVFARWIASNENNGRDKDVK*

Sequence

>CNT30690196
ATCAACAGATGTTCTCAAGATTTCGATCAAGCATCTCCAGCCCCATCTTCATTGGCCTCGTTGGTCGATTGCCGCCGTCCCGCGGCCCAGCGACCGAGCA
GTCCTCTGATATCCCACTCCAAATCCCTCAGGCGTAGCAACAGGGACGGGACAAACAATATCATGGATGATGCATTCTGCACGTACGTCTTCGCAAGATG
GATAGCTTCCAACGAGAATAATGGCCGCGACAAGGATGTCAAGTGACATTCTGGCCTTCTGGGTGACGACGGGGTATGAGGATATTTCCCTCTTCGGCCC
ATGATAAAGGTGGACACTTCAGCGGACAACATTGTTTGCGTGGTCACTTGGAAACCTTTTGTACTACCATACAAATCACAAATGCTTTTGTAAAGAAATG
ATGTAGACACGGTGAAAATATCTTTCACAAACCTGCTTATCTCAAACGATTCCGCGGTATCCAGTACTCCCTTCCGTTTCACAATGTAAGTCATTCTAGT
ATTTTCCACATTCATATTGATGCTAATAAATCTAGACATATATATCTATTTAGATTCATTAGTATTAATATAAATGTGGAAAATGGTAGAATGACTTATA
TTGTGAAACGGAGGAAGTACCATTTTGTTACGAAAATATATCTATTGCGGAATAACTTGGCATCTAAAAACTTGCTATATTGTTAACACTACTTGTTGTA
AGTAATCTGTTGAGTTTCTTTCTCCTTGTAATGAAATAGGTAATCTATAGCAATAGTCCATTCAATAATA