« Back to Setaria viridis search


Detailed information on CNT30678148


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000578, E-value = 3e-101

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3019929Setaria viridisCitrullus lanatus15.6823.7388.35103forward
CNT30360303Setaria viridisLactuca sativa43.0754.5386.57283forward

Expression of CNT30678148

Peptides detected in this lncRNA

>peptide 1 (34 aa)
ACTQASKATRLAAAPVLSEKDTARTIFFNKIIAQ*

>peptide 2 (30 aa)
MPLNFTSFCLCFINCFSTKDKTVSPAHKWL*

Sequence

>CNT30678148
GGGCTTGTACACAGGCTTCTAAAGCCACACGATTAGCTGCTGCACCAGTCCTGAGTGAAAAAGATACCGCGAGAACGATCTTTTTCAATAAAATCATCGC
GCAATAAATCAACAAAACCTAAAGTTATTTCGCGTTCCCCTTCTAACTTACCTACTACTGTACCGGAGTGGATATGATCTCCCCCCGACATACGCAATGC
TTTAGCTAATACACGGAAATGCATACCATGATTTTTCTGTCTATCAATAACTGCATGCATTGCTCGGTGAATGTGAAGAAGTAGTCATGCATTACAATAG
GAACCCCTAATTCCCTTGCAAATGCAGCTCTCTTAATCATTTCTTCGCATGTACCTGCAGTCGCATTCAAGTAATGCCCCTTAATTTCACCAGTTTCTGC
TTGTGCTTTATAAATTGCTTCAGCACAAAAGACAAAACGGTCTCTCCAGCGCATAAATGGTTGTGAGTTTACGTTTTCATCATCTTTGGTAAAATCAAGT
CCACCGCTCCAAACAGTTGTCCATGTACCAGTAGAAGATTCCGCAGCTACTGCAGCCCCTGCTTCTTCAGGCGGAACCCCGGGCTGAGGAGTTACTCGGA
ATGCTGCCAAGATATCAGTATCCTTGGTTTCGTACTCCGGGGTGTAGTAAGTCAATT