Detailed information on CNT30675448


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30347157Setaria viridisEragrostis tef8.3134.3583.19113reverse complement
CNT30370040Setaria viridisOryza glumipatula8.0920.0483.64110forward
CNT30106215Setaria viridisOryza longistaminata11.0325.9583.33150reverse complement
CNT30556160Setaria viridisPanicum hallii16.6925.5985.02227forward

Expression of CNT30675448

Peptides detected in this lncRNA

>peptide 1 (57 aa)
LQYMHVSCKHARSPSSREGHKFLLKHNKNNPCIKWNTMEFHTPKRKTGSLCNEAGFS*

>peptide 2 (41 aa)
MNLLRLINPSLANGYCSTALSNHGLIRLNRFVSGIRLHLCH*

>peptide 3 (64 aa)
MEPAQTLRRPEDVRIFNQLNSTWSIESTFKNLASNATAAMDALSSRNPTSPSHGCFVCMHFPPA*

>peptide 4 (29 aa)
MVSLHWEGKIMVNYISSPLAIGMMTLVCS*

>peptide 5 (46 aa)
MEHREYVQKFGQQRYCRYGCSILPQSNIAKSRLLCLHAFPSCLIEL*

>peptide 6 (54 aa)
MLYPPAIQHRQVTVALSACISLLPDRTLTSSITGLSYRPAQLGRNSPSLLLQGW*

Sequence

>CNT30675448
TCTCCAATACATGCATGTAAGTTGTAAGCATGCAAGATCTCCGAGTAGTAGGGAGGGGCACAAATTTTTATTAAAGCATAATAAAAACAATCCTTGTATT
AAATGGAATACAATGGAATTTCACACGCCAAAAAGAAAAACAGGGAGCCTCTGTAACGAAGCAGGCTTCTCTTAACGAAACAGGGAGTACGTCACAAATT
AGTTCAGAAATAGTTGGCGCCAGCATGCATATGTACGTATGTAGCAGCATTTTCTCTCAAAGAAGTCATACACACAAGGCAACATTAATGGGTTGTTAAT
GGGTTGTTTGGATACGAGGTGCTAAACTTTAGCAGGGTCACATCGGATATTCGGATGCTAATTAGAAGGACTAAACATGACCTAATTACAAAACTAATTG
CATAGATGGAGTCTAATTCGCGAGATGAATCTATTAAGACTAATTAATCCATCATTAGCAAATGGTTACTGTAGCACCGCATTATCAAATCATGGACTAA
TTAGGCTTAATAGATTCGTCTCGGGAATTAGACTCCATCTGTGCCATTAGTTTTATGATTAGACTATATTTAATACTCCTAATTAGTATCCAAACATCCG
ATGTGACAGGTGCTAAAGTTTAGCACGGTGTTCCCAAACACCCCATTCGATCTGAGATTTCCCTCAACATGGAGCCTGCCCAAACTCTTAGAAGGCCAGA
AGACGTTAGAATCTTTAATCAGTTGAACTCTACATGGAGCATAGAGAGTACGTTCAAAAATTTGGCCAGCAACGCTACTGCCGCTATGGATGCTCTATCC
TCCCGCAATCCAACATCGCCAAGTCACGGTTGCTTTGTCTGCATGCATTTCCCTCCTGCCTGATCGAACTCTGACCTCATCGATCACCGGCTTGTCGTAC
CGGCCTGCACAACTAGGCAGGAACTCGCCATCTCTTCTCTTGCAAGGATGGTGAGCCTACACTGGGAAGGAAAAATTATGGTGAACTATATATCATCACC
TCTCGCAATCGGCATGATGACCCTAGTTTGCAGCTAAGTACAAGTGTCCGGCTGTGATTGACCGGCTCAGTGGATATCAAAGGTGCGGCGTGCCTTTTGT
TTATGGCGAGTGTTCCGGCCGGCAGGCACGTCGCCGGCCAATCAACTTTACTTTCGCTGGTGGATTAACCTGCGGGGCCACCAGGGAGCTGCTTTTCTGC
CCCCGCTCCATCCACACCCATAGGTGAGATTAGCTGATGCCCTGCGAATGAATACGGTTTATTCACCGGTGATTAAGGCTGTCCCGATCCACCGTCCGTC
CATGTGAAAGCAAGGCTCCAAAGGTGGTGGTGGCGGCACGCACGCAACCTTGTGAGGGCC