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Detailed information on CNT30370040


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000727, E-value = 1e-121

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690463Oryza glumipatulaOryza sativa28.7814.1889.87158reverse complement
CNT30675448Oryza glumipatulaSetaria viridis20.048.0983.64110forward
CNT30555359Oryza glumipatulaOryza glaberrima34.614.4187.37190forward
CNT30447626Oryza glumipatulaSaccharum spontaneum27.877.6688.24153forward
CNT30366263Oryza glumipatulaSorghum bicolor44.999.6784.21247forward
CNT30595820Oryza glumipatulaOryza meridionalis50.279.0888.41276forward
CNT30109079Oryza glumipatulaOryza longistaminata47.1831.8691.51259forward
CNT30550605Oryza glumipatulaOryza brachyantha36.7922.3786.14202reverse complement

Expression of CNT30370040

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MCPKIRCDVFGKKFCRTKRVLIKLYTGVSCGQKTWRYEVQFLSPLSSKL*

Sequence

>CNT30370040
GACACCCAAAAATTTCCTTTTCCCCAACTAAACACACCTGACACGTTTGACCGGATGTCGGAAGGGGTTTTCGGACACGAATGAAAAAACTAATTTCAGA
ACTCGCCTGGAAACCGCGAGACGAATCTTTTAAGACTAATTAAGCCGTCATTAGCACATGTGGGTTACTGTAGCACTTATGGCTAATCACGGACTAATTA
GGCTTAAAAGGTTCGTCTCGCGATTTTCCCCATAACTGTGCAATTAGTTTTTCTTTTTATCTATATTTAATGCTTCATGCATGTGTCCAAAGATTCGATG
TGATGTTTTTGGGAAAAAATTTTGTAGAACTAAACGGGTCCTAATTAAGTTGTATACCGGTGTTAGCTGTGGTCAGAAAACATGGAGGTACGAAGTACAA
TTCCTGTCCCCTTTGAGTTCTAAGCTTTGAACACACACTCTCTCTCTCTCTCCGCGCTAGTGTGCGCGCCAAGAAGCCTGTACTACATTCGTTCTAAAAA
AGAATAAAGGATATGTCGTGTTGGACATGAACATAGTCTTCAATATGCA