Detailed information on CNT30106215


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003736, E-value = 9e-138

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675448Oryza longistaminataSetaria viridis25.9511.0383.33150reverse complement
CNT30554719Oryza longistaminataOryza glaberrima29.7612.4191.28172reverse complement

Expression of CNT30106215

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MGLKLLSPYHIGSLDTIININRRLLIKLIYNLGLIRETNLLSLINP*

>peptide 2 (55 aa)
EKNLERRRRRERRAARPDGDSDGDLIRPPPSLRLVAETCICVSLKKRHASVYDEK*

>peptide 3 (51 aa)
KKPREEAAAGAARGATRRRQRRRPHPAATFSPTCCRDMHLCIPQKKTCICV*

>peptide 4 (65 aa)
KKTSRGGGGGSGARRDPTATATATSSGRHLLSDLLQRHASVYPSKKDMHLCMMRSRDGATLFRWD*

Sequence

>CNT30106215
GAAAAAAACCTCGAGAGGAGGCGGCGGCGGGAGCGGCGCGCGGCGCGACCCGACGGCGACAGCGACGGCGACCTCATCCGGCCGCCACCTTCTCTCCGAC
TTGTTGCAGAGACATGCATCTGTGTATCCCTCAAAAAAAGACATGCATCTGTGTATGATGAGAAGTAGAGATGGAGCTACCCTGTTTAGATGGGACTAAA
ACTTTTAAGTCCCTATCACATCGGATCTTTGGACACTATTATAAATATTAATCGTAGACTATTAATAAAACTCATCTATAATCTTGGACTAATTCGCGAG
ACGAATCTATTGAGCCTAATTAATCCATGATTAGCCTATGTGATGCTACAGTAAACATTCTCTAATTGTGGATTAATTAGGCTTAAAAAATTTATCTTGT
GAATTAGCTTTCATTTATGTAATTAGTTTTGTAATTAGTATATATTTAACACTTTAAATTAGTGTCTAAATACAGAGACTAAAGTTAAGTCCCTAGATCC
AAACACCACCTTAGGGCTTCTTGTGTACTGCAATCCTGAATTTACAGCATTCACTGCAATCACCATTGCTTATCATCT