Detailed information on CNT30675336


BLAST search results

BLAST vs Swiss-Prot:
sp|P33628|TBA_PICAB, E-value = 2e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30380834Setaria viridisManihot esculenta33.166.281.56282forward
CNT30363168Setaria viridisSorghum bicolor27.5823.8394.47235forward
CNT3049477Setaria viridisCucumis sativus11.7435.2191100forward

Expression of CNT30675336

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MPCSSHTTSQNLEPIWLPHWPPWMWRISLMAGSQGR*

>peptide 2 (50 aa)
MQESLPPEHSSELLTHTAEHLLDGGSGRGAGQQRTSCSWHPTSAGSAQGR*

>peptide 3 (66 aa)
MFLASHICWVSSGTVRARYCCEPRECSGPWPSCSPRQTGRRRSCQGGRSGRTARCGRCPWYQARGP*

>peptide 4 (80 aa)
MLLSASVNSISSMPSPVYQCKKAFLLNIAVNCSLTRRNISWMEVAAVARVSSAHHVLGIPHLLGQLRDGEGTVLLRATRV*

Sequence

>CNT30675336
AATAATCCAATACTCCTCCCATATATCAAGCAGTGCAGGCGAACATGTCTTTCTGGTGATAACAGAGGATAAGCGGTAGCATGCAGCATGCTACCACGGA
GGTACGTACTACATACTCAGCATAACATACGCGAATAACAATAACCAAACATACGCAAGCTCCAGCTTAAAGCAAACCAGGATCCCGAGGGTCGTTCATG
TTGCTCTCTGCCTCAGTGAACTCCATCTCGTCCATGCCCTCACCAGTGTACCAATGCAAGAAAGCCTTCCTCCTGAACATAGCAGTGAACTGCTCACTCA
CACGGCGGAACATCTCCTGGATGGAGGTAGCGGCCGTGGCGCGGGTCAGCAGCGCACATCATGTTCTTGGCATCCCACATCTGCTGGGTCAGCTCAGGGA
CGGTGAGGGCACGGTACTGCTGCGAGCCACGCGAGTGTAGTGGCCCTTGGCCCAGTTGTTCCCCGCGCCAGACTGGCCGAAGACGAAGTTGTCAGGGCGG
AAGATCTGGCCGTACGGCCCGGTGCGGACGCTGTCCATGGTACCAGGCTCGAGGTCCATGAGCACGGCGCGCGGGACGAAGCGGCCGCATGAGGCCTCAT
TGTAGTAGACGTTGACGCGCTCGAGCTGGAGGTCGGAGGTGCCAACGTAGCGGCCGGTGGGGTCGATGCCGTGCTCGTCGCACACCACCTCCCAGAACTT
GGAGCCAATCTGGTTGCCGCACTGGCCGCCCTGGATGTGGAGGATCTCCCTCATGGCTGGATCTCAAGGTAGGTAGCTGCAGAAGCGAGTGGGCCGTCGG
TTGAGAGGGAGAGGGGCGAGAGGGGTATGGTAAATGGAATGGGCGAGAGGGC