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Detailed information on CNT30363168


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675336Sorghum bicolorSetaria viridis23.8327.5894.47235forward
CNT30534291Sorghum bicolorEucalyptus grandis21.132.6588.46208forward
CNT3047350Sorghum bicolorPrunus dulcis13.7959.6583.09136forward
CNT3092760Sorghum bicolorSolanum tuberosum19.5727.8983.94193forward
CNT30223001Sorghum bicolorHordeum vulgare11.5641.0193.86114forward
CNT30390564Sorghum bicolorTriticum turgidum18.9761.5192.51187forward
CNT30511260Sorghum bicolorSolanum lycopersicum18.0544.1789.89178forward
CNT305432Sorghum bicolorZea mays17.5547.1498.84173forward
CNT30369370Sorghum bicolorOryza glumipatula20.9931.2290.82207forward
CNT30422340Sorghum bicolorPapaver somniferum19.9823.2684.77197forward
CNT3036150Sorghum bicolorCucumis melo11.7634.4287.07116forward
CNT3049477Sorghum bicolorCucumis sativus12.5843.6690.32124forward

Expression of CNT30363168

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MWLSRVQNTLLVLDAILLVLVLCLLIGSGILVLLVLGHQIIHVALSLGELHLIHALTSVPMQESLPPEHSSELLAHTAEHLLDGGP*

>peptide 2 (83 aa)
MPSSSSSYSASSSAVASWYCWYSDTRSFMLLSASVNSISSMPSPVYQCKKAFLLNIAVNCSLTRRNISWMEVHEHGARHEAAA*

>peptide 3 (46 aa)
MLVADNLPELGTDLVPALAALDVEDLPHGLISRLVAAEEEASRPSR*

>peptide 4 (48 aa)
DKIRILNVKNHHSIKHPDTIIKYSSHISHGISSSAGEQVFVVAKEGKW*

>peptide 5 (52 aa)
MAYQAVQVNKSLWWRKRASGSIQHATPQKCYYIPSINMREYNNKQTIGKAQA*

Sequence

>CNT30363168
GGGACAAAATTCGCATTCTTAATGTTAAGAACCATCACAGCATCAAGCACCCAGATACAATAATCAAATACTCCTCACATATAAGCCATGGCATATCAAG
CAGTGCAGGTGAACAAGTCTTTGTGGTGGCGAAAGAGGGCAAGTGGTAGCATACAGCATGCTACCCCACAGAAGTGCTACTACATACCCAGCATTAACAT
GCGCGAATACAATAATAAGCAAACCATAGGCAAAGCACAAGCTTGAAAGAAAAAACCAGGTCCAGAGAGGGGTACAAATATGTGGCTGTCCAGAGTCCAG
AACACCTTACTCGTCTTGGATGCCATCCTCCTCGTCCTCGTACTCTGCCTCCTCATCGGCAGTGGCATCCTGGTACTGCTGGTACTCGGACACCAGATCA
TTCATGTTGCTCTCAGCCTCGGTGAACTCCATCTCATCCATGCCCTCACCAGTGTACCAATGCAAGAAAGCCTTCCTCCTGAACATAGCAGTGAACTGCT
CGCTCACACGGCGGAACATCTCCTGGATGGAGGTCCATGAGCACGGCGCGCGGCACGAAGCGGCCGCATGAGGCCTCGTTGTAGTAGACGTTGACGCGCT
CGAGCTGGAGGTCGGAGGTGCCGACGTAGCGTCCGGTGGGGTCGATACCATGCTCGTCGCAGACAACCTCCCAGAACTTGGAACCGATCTGGTTCCCGCA
CTGGCCGCCCTGGATGTGGAGGATCTCCCTCATGGCTTGATCTCAAGGTTGGTAGCTGCAGAAGAAGAAGCGAGTCGGCCGTCCAGATGAGGGGGGAGCG
GGGAGGGGAAGGGGGAGGGTGTGGTAAATGAAATGAGCGAGTGGCCAGAAAGGGGGCGGATTTTATAGTGGGCGCGGGGGGCTAGGGCACCGGATCAGGC
GGCCCAGTCGCGTTCCCTCCAACGCCGCCGTCGACCGCCGGAGGCCGTCCGATCGTTCCCATCGGACGGGCGGCTGCGTCGGGTTC