« Back to Manihot esculenta search


Detailed information on CNT30380834


BLAST search results

BLAST vs Swiss-Prot:
sp|P33628|TBA_PICAB, E-value = 3e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675336Manihot esculentaSetaria viridis66.233.181.56282forward
CNT30488155Manihot esculentaOlea europaea20.4221.3285.0687forward
CNT30388443Manihot esculentaTriticum turgidum37.0953.282.91158forward
CNT30213619Manihot esculentaHelianthus annuus21.8329.3484.9593forward
CNT30721065Manihot esculentaTriticum spelta37.5671.4383.12160forward
CNT30364150Manihot esculentaSorghum bicolor7381.4182.96311forward
CNT30621647Manihot esculentaCajanus cajan21.639.8383.792forward
CNT30426941Manihot esculentaPapaver somniferum25.8219.184.55110forward
CNT3034106Manihot esculentaTheobroma cacao40.3884.3184.3172forward
CNT3022287Manihot esculentaPopulus trichocarpa82.6385.6488.07352forward

Expression of CNT30380834

Peptides detected in this lncRNA

>peptide 1 (62 aa)
QNRINQLGSLSVMPLGPVISSTRLTKHKVIRPEDLTIWTSPHTVHGTRLKIHKHGTRDKSPA*

>peptide 2 (45 aa)
MLVTNDLPKLGSNLVTTLSTLNVKDFSHFCLTYFTSFPLFSQNPN*

>peptide 3 (32 aa)
PKPHQSARLPQCNAPWPSYFQHQTDQTQSYQA*

Sequence

>CNT30380834
CCAAAACCGCATCAATCAGCTCGGCTCCCTCAGTGTAATGCCCCTTGGCCCAGTTATTTCCAGCACCAGACTGACCAAACACAAAGTTATCAGGCCTGAA
GATTTGACCATATGGACCAGTCCTCACACTGTCCATGGTACCAGGCTCAAGATCCATAAGCACGGCACGAGGGACAAATCGCCCGCATGAGGCCTCATTG
TAGTACACATTAACGCGCTCTAACTGCAGATCAGAGGATCCAGCGTATCGTCCAGTAGGGTCGATGCCATGCTCGTCACAAACGACCTCCCAAAACTTGG
ATCCAATCTGGTTACCACATTGTCCACCTTGAACGTGAAGGATTTCTCTCATTTTTGTTTAACTTATTTCACTTCGTTTCCTCTGTTTTCTCAGAATCCA
AACTGAATTCAGAATATGAATAGATA