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Detailed information on CNT30674395


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30188757Setaria viridisSecale cereale33.958.4788.8259forward
CNT30225130Setaria viridisHordeum vulgare32.258.2989.43246forward
CNT30363950Setaria viridisSorghum bicolor33.382296.86255forward

Expression of CNT30674395

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MNLLPPFLRSAAISSLVTVSSCWVEMRTVWTRTGTMAPPSLTYSTVTWVLPSGLSQAQVPFLRTSVRRAPSLVARTWLSGMSSGVSSVA*

>peptide 2 (38 aa)
TDSKKGEKQKRKKIPDDQTSTGKDQRVILAATPNYTNH*

Sequence

>CNT30674395
ACAGACTCGAAAAAGGGGGAGAAACAAAAGAGGAAAAAGATACCGGACGACCAAACTAGTACAGGTAAAGACCAGCGCGTAATCCTGGCTGCCACACCAA
ATTATACCAATCACTAAGCCGCCGGGCGGCGACATGGCTTTGCTGCAGCAATTGCCAAAGCCTTCTTATCTTCTTCTGCATCTTCTTCTTCTTCTAAGGA
AGCAGCCAGTCACTCACTGATCAGACACACATCCACGAGCAGGAGCAGCAGCAGCAGCAGTGCTTGCGGGTAACATCAGCAGCAAGAGGTAGATGATAAG
CACGGAGACGGACACTCTTCTTCTCTAAGCGGACGCCTTGTCGAACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCGGTGTCGTCGCGCCCGAAGTGA
CCGTAGGCCGCGGTCTTGATGAACCTGTTGCCGCCCTTCTTGAGGTCGGCGGCGATCTCGTCGTTGGTGACGGTCTCGTCGTGCTGGGTGGAGATGAGGA
CGGTGTGGACGCGGACGGGGACCATGGCGCCGCCCTCGTTGACGTACTCGACGGTGACCTGGGTCTTGCCGTCGGGCCTGAGCCAGGCGCAGGTGCCGTT
CTTGCGGACCTCGGTGAGGCGCGCGCCGAGCTTGGTAGCGAGGACGTGGCTGAGCGGCATGAGCTCGGGGGTCTCGTCGGTGGCGTAGCCGAACATGTGA
ACAGGAAGCTCTCCGCCGCCATTGCTGCTGCTGCCTTCTCGGGTAGATTACTCCACCAACCTCT