Detailed information on CNT30673122


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 1e-96

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521125Setaria viridisSetaria italica56.9185.3799.64560forward
CNT30189384Setaria viridisSecale cereale43.0953.9487.5424forward

Expression of CNT30673122

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MTMLVLVQVSQATLLSGSSARQASSTASETWSQSLSGCPSFTDSEVKRK

>peptide 2 (81 aa)
MRSTDDKATRWVKVEDGLLVKPDICRHETDVAASVPDNLLVVDVGLGGDLTKDHDHVSLGAGLASNLAVGVLSKASIKHSI*

>peptide 3 (36 aa)
MTKRPDGLRWKMVFSSSPTSADTKPMLRQVSLTIFS*

>peptide 4 (35 aa)
MMIMPGLKSKISLSGIVPVPYVSTNTERGSGTPMA*

>peptide 5 (38 aa)
MIARGRSRITTQKPPNMISAADQKLLLKGRLRQKASPT*

Sequence

>CNT30673122
TTGCACTGACCAAAGAACATTAATAGATCATCAGGACTGTTCAAGTAATCACGCATGACAAGATAGAAAGCAGCAGGTCCCCTTCCTTCTCAAAGTAAAT
AACCAGACACAGTAATACCCTCACAAGTACCACTTATTAGGACAGTACAATACAAATGATAGCAAGGGGCAGATCAAGAATCACAACACAGAAGCCACCA
AACATGATAAGCGCAGCAGACCAAAAGCTTCTTCTCAAAGGGCGCCTTAGGCAGAAGGCTTCTCCCACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTC
AGGGTCGTCCCTTCCGAAGTGACCGTAGGCAGCTGTCTTGAGGTAGCGCCCGTTGCCGCCTTTCTTGAGGTCAAGGTTGATGATGATCATGCCAGGCCTG
AAGTCGAAGATCTCCTTGTCGGGGATCGTGCCAGTGCCATATGTGTCAACAAACACGGAGAGGGGCTCAGGCACACCGATGGCATAGGAGACCTGGACGA
TGGCGCGGCGAGCAAGGCCATTAGCGACAATGCTCTTGGCAGCTTGCCTGGCAATGTAGGCTCCACTGCGGTCAACCTTGGTTGGGTCCTTGCCGGAGAA
AGCACCACCACCGTGGGCTCCCCAGCCACCATAGGTGTCAATGATGATCTTCCGGCCAGTGAGACCAGCATCACCATGAGGTCCACCGATGACAAAGCGA
CCAGATGGGTTAAGGTGGAAGATGGTCTTCTCGTCAAGCCCGACATCTGCCGACACGAAACCGATGTTGCGGCAAGTGTCCCTGACAATCTTCTCGTAGT
CGACGTTGGCCTTGGTGGTGATCTCACCAAAGACCATGACCATGTTAGTCTTGGTGCAGGTCTCGCAAGCAACCTTGCTGTCGGGGTCCTCAGCAAGGCA
AGCATCAAGCACAGCATCTGAGACCTGGTCGCAGAGCTTGTCAGGGTGTCCCTCATTCACGGACTCCGAGGTGAAGAGGAAGGT