Detailed information on CNT30521125


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 3e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673122Setaria italicaSetaria viridis85.3756.9199.64560forward
CNT30711739Setaria italicaGlycine max52.1328.5781.29342forward
CNT30189384Setaria italicaSecale cereale61.7451.5387.41405forward
CNT3059692Setaria italicaArabidopsis lyrata9.9122.4992.3165forward
CNT30116854Setaria italicaOryza nivara22.716.0696.64149forward
CNT30594307Setaria italicaEragrostis curvula12.823.9395.2484forward

Expression of CNT30521125

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MIARGRSRITTQKPQNMISAADQKLLLKGRLRQKASPT*

>peptide 2 (35 aa)
MMIMPGLKSKISLSGIVPVPYVSTNTERGSGTPMA*

Sequence

>CNT30521125
CCCCTTCCTTCTCAAAGTAGCCTGCAGCTTCATTCTTTGGTTCACCATTACATAAACAGCAAAACCAGAAATAGCAGACAATAATTCCTCCTCTAGGTAA
ATAACCAGACACAGTAATACCCTCACAAGTACCACTTATTAGGACAGTACAATACAAATGATAGCAAGGGGCAGATCAAGAATCACAACACAGAAGCCAC
AAAACATGATAAGCGCAGCAGACCAAAAGCTTCTTCTCAAAGGGCGCCTTAGGCAGAAGGCTTCTCCCACTTGAGGGGCTTCACCACCTCCCAGGTGAAG
TCAGGGTCGTCCCTTCCGAAGTGACCGTAGGCAGCTGTCTTGAGGTAGCGCCCGTTGCCGCCTTTCTTGAGGTCAAGGTTGATGATGATCATGCCAGGCC
TGAAGTCGAAGATCTCCTTGTCGGGGATCGTGCCAGTGCCATATGTGTCAACAAACACGGAGAGGGGCTCAGGCACACCGATGGCATAGGAGACCTGGAC
GATGGCGCGGCGAGCAAGGCCATTAGCGACAATGCTCTTGGCAGCTTGCCTGGCAATGTAGGCTCCACTGCGGTCAACCTTGGTTGGGTCCTTGCCGGAG
AAAGCGCCACCACCGTGGGCTCCCCAGCCACCATAGGTGTCAATGATGATCTTCCG