CANTATAdb - search

Detailed information on CNT30673027

BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 1e-80

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30381524	Setaria viridis	Manihot esculenta	64.69	50.06	85.99	414	forward
CNT30113329	Setaria viridis	Ficus carica	64.06	38.07	86.59	410	forward

Expression of CNT30673027

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MIARGRSRITTQKPPNMISAADQKLLLKGRLRQKASPT*

>peptide 2 (42 aa)
MMIMPGLKSKFSLIILRISLSGIVPVPYVSMMIFRPVRPASP*

>peptide 3 (52 aa)
MTKRPDGLRWKMVFSSRYCSGMTGLMTCSLRSAAISSLVTVSSCWVEMRTVW*

>peptide 4 (72 aa)
MRSTDDKATRWVKVEDGLLVKVLLRDDRLDDMLLEVSGNLIVGDCLVVLGRDEDSMVTSWGVLVSDPTRPQRT

Sequence

>CNT30673027
CTCCTCTAGGTAAATAACCAGACACAGTAATACCCTCACAAGTACCACTTATTAGGACAGTACAATACAAATGATAGCAAGGGGCAGATCAAGAATCACA
ACACAGAAGCCACCAAACATGATAAGCGCAGCAGACCAAAAGCTTCTTCTCAAAGGGCGCCTTAGGCAGAAGGCTTCTCCCACTTGAGGGGCTTCACCAC
CTCCCAGGTGAAGTCAGGGTCGTCCCTTCCGAAGTGACCGTAGGCAGCTGTCTTGAGGTAGCGCCCGTTGCCGCCTTTCTTGAGGTCAAGGTTGATGATG
ATCATGCCAGGCCTGAAGTCGAAGTTCTCCTTAATAATCTTGAGGATCTCCTTGTCGGGGATCGTGCCAGTGCCATATGTGTCAATGATGATCTTCCGGC
CAGTGAGACCAGCATCACCATGAGGTCCACCGATGACAAAGCGACCAGATGGGTTAAGGTGGAAGATGGTCTTCTCGTCAAGGTACTGCTCAGGGATGAC
AGGCTTGATGACATGCTCCTTGAGGTCAGCGGCAATCTCATCGTTGGTGACTGTCTCGTCGTGCTGGGTAGAGATGAGGACAGTATGGTAACAAGTTGGG
GAGTGCTCGTCTCAGATCCGACCCGGCCGCAGCGCACGCC