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Detailed information on CNT30381524


BLAST search results

BLAST vs Swiss-Prot:
sp|A9P822|METK1_POPTR, E-value = 2e-129

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673027Manihot esculentaSetaria viridis50.0664.6985.99414forward
CNT30549907Manihot esculentaIpomoea triloba28.5443.9584.75236forward
CNT30515028Manihot esculentaJuglans regia43.7742.6483.43362forward
CNT30376698Manihot esculentaArabidopsis thaliana34.142.4783.69282forward
CNT3047443Manihot esculentaPrunus dulcis40.1527.8383.73332forward
CNT3090332Manihot esculentaSolanum tuberosum31.6840.3184.73262forward
CNT30225130Manihot esculentaHordeum vulgare22.3743.8483.24185forward
CNT30662024Manihot esculentaTriticum dicoccoides32.8953.5481.25272forward
CNT3013982Manihot esculentaZea mays31.0888.6287.16257forward
CNT30626924Manihot esculentaDaucus carota42.0827.684.2348forward
CNT30570759Manihot esculentaVitis vinifera30.7145.286.61254forward
CNT3055164Manihot esculentaAmborella trichopoda48.2534.782.21399forward
CNT30174424Manihot esculentaVigna angularis36.5237.1583.11302forward
CNT30113329Manihot esculentaFicus carica53.8141.3285.84445forward

Expression of CNT30381524

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MTKRPDGLRWKMVFSSRYFSGMTALMTCSLRSAAISSFVTVSSCWVEMRTVCTRTGTIAPLSL*

>peptide 2 (49 aa)
MFLEVSGNLIICDSLIVLGGDEDSVYTDWDHCTIVIVVLDSYLSLSIRS*

Sequence

>CNT30381524
AATCAAATTAAACAAAATTCTCCTACATTTTTATAGCACCAACACTGGTAAATGAAACGTGGTAAAAAAGAAATAAAATTGAATAGGGCATTTTATGTAT
TAGATTAGACCATTGCAGACTTTTAGATTTGTAGTGCAGCAGTAAGAAACACGCCAACTTATTCATCAACCAGCCAAAGCAAGCACCGACAGCAGGGATA
GGATAAATCACACTTAAGCCTGAGGCTTATCCCACTTGAGGGGCTTGACGACCTCCCAGGTGAAGTCTGGGTCATCTCTTCCAAAGTGTCCATAGGCAGC
TGTCTTCAAGAACCTGTTGCCTCCTCTCTTCAGGTCTAGGTTGATGGTCATCATTCCAGGTCTAAAGTCAAAATTCTCTTTCACAATCTTGAGAATCTCC
TTGTCAGGAATCTTTCCTGTTCCATAGGTGTCAATAATGATCTTGCGTCCAGTTAGTCCTGCATCACCGTGAGGACCACCAATGACAAAACGACCAGATG
GGTTAAGGTGGAAGATGGTCTTCTCATCAAGGTACTTCTCAGGGATGACAGCTTTGATGACATGTTCCTTGAGGTCAGCGGCAATCTCATCATTTGTGAC
AGTCTCATCGTGCTGGGTGGAGATGAGGACAGTGTGTACACGGACTGGGACCATTGCACCATTGTCATTGTAGTACTCGACAGTTACCTGAGTCTTTCCA
TCAGGTCTTAGCCATGGGCAGGTGCCATTCTTCCTAACCTCAGTAAGGCGAGCTCCAAGCTTGGTGGCCAGGACATGGCTCAATGGCATATACTCCGGCG
TCTCATCAGTGGCATAACCAAACATAT