Detailed information on CNT30672945


BLAST search results

BLAST vs Swiss-Prot:
sp|P49611|METK1_BRAJU, E-value = 1e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549907Setaria viridisIpomoea triloba27.4624.9586.57134forward
CNT3013982Setaria viridisZea mays34.2257.5995.21167forward

Expression of CNT30672945

Peptides detected in this lncRNA

>peptide 1 (33 aa)
NTNDSKGQIKNHNTEATKHDKRSRPKASSQRAP*

>peptide 2 (83 aa)
MVFSSRYCSGMTGLMTCSLRSAAISSLVTVSSCWVEMRTVWTRMGTIAPPSLPEPGAGPILAHLCETSTKLGGKDVAEGHQLRG

>peptide 3 (37 aa)
MLLEVSGNLIVGDCLVVLGRDEDSVDTDGDHRTTLIA*

>peptide 4 (41 aa)
TIQMIARGRSRITTQKPPNMISAADQKLLLKGRLRQKASPT*

Sequence

>CNT30672945
ACAATACAAATGATAGCAAGGGGCAGATCAAGAATCACAACACAGAAGCCACCAAACATGATAAGCGCAGCAGACCAAAAGCTTCTTCTCAAAGGGCGCC
TTAGGCAGAAGGCTTCTCCCACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCAGGGTCGTCCCTTCCGAAGTGACCGTAGGCAGCTGTCTTGAGGTAG
CGCCCGTTGCCGCCTTTCTTGAGGTCAAGGTGGAAGATGGTCTTCTCGTCAAGGTACTGCTCAGGGATGACAGGCTTGATGACATGCTCCTTGAGGTCAG
CGGCAATCTCATCGTTGGTGACTGTCTCGTCGTGCTGGGTAGAGATGAGGACAGTGTGGACACGGATGGGGACCATCGCACCACCCTCATTGCCTGAGCC
AGGGGCAGGTCCCATTCTTGCGCACCTCTGTGAGACGAGCACCAAGCTTGGTGGCAAGGACGTGGCTGAGGGGCATCAGCTCAGGGGT