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Detailed information on CNT30672195

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3013048	Setaria viridis	Zea mays	34.72	29.99	96	200	forward
CNT30593390	Setaria viridis	Eragrostis curvula	21.7	52.52	90.4	125	reverse complement

Expression of CNT30672195

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MRQLACSINQSTYAPPGRKTMELQRRMASLVAGDEVGGRPGSRAGPCRPRGSKLPPG*

>peptide 2 (30 aa)
MVMRPSPKEPTLMGVPAMVEEIAMVEAAIA*

>peptide 3 (66 aa)
LTTREQNHYYCTNIILVYNADSSSRLAPEMQRETRHACGSSLAASTNPRTPLPAGRQWSCRGEWRA*

Sequence

>CNT30672195
TTAACCACCAGGGAACAAAACCACTACTATTGCACAAACATCATCTTAGTGTACAACGCCGACTCATCATCTCGACTTGCCCCTGAAATGCAACGTGAAA
CAAGACACGCATGCGGCAGCTCGCTTGCAGCATCAACCAATCCACGTACGCCCCTCCCGGCCGGAAGACAATGGAGTTGCAGAGGCGAATGGCGAGCTTA
GTTGCCGGGGACGAAGTTGGTGGTCGGCCAGGTTCTCGAGCGGGCCCTTGCCGGCCGAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCT
CGCCGAGTGGGCCGCCGGCAATGCGGTAGCTCGGGGGCTCGCCGGAGAAGGGGCCGAGGTACTTGACGCGGTCGGGGCCGTACCACGGGCTGCCGGACGC
CGCCACCTTGGGCTTGGCCGCGGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGAGCCCACCTTGATGGGGGTGCCGGCCATGGTGGAGGAGATCGCC
ATGGTGGAGGCAGCCATTGCGTGAGGCGAGAGAGTGTGCTGGACCAGTCGGTAGCTGCTGCTGATGGGTGAAGGTG