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Detailed information on CNT3013048


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672195Zea maysSetaria viridis29.9934.7296200forward

Expression of CNT3013048

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MVMRPSPKEPTLMGVPAIAVEEIAMVEAAIAEAERESVGPVAIDAAG

>peptide 2 (33 aa)
MQCNVKQKTHMHLAASINPRTYTLSDPKDNEVA*

>peptide 3 (78 aa)
MWSARFSSGPLPVARGLAGEGAEVLDAVGAVPGAAGRRHLGLAHGLAHGDAALAEGTHLDGGAGHRRGGDRHGGGSHC*

Sequence

>CNT3013048
TACTTTCATTTTCATTGATATCTGCTGTTTATCCAAGCACATTTATGCTTGCCTTCTTAAGATAAAGAGCTAGAGAGAAAAAGGAGTATAGAAGAAAAAC
AAATTAATGGATATCAACAATTAACCAGCAGGAAACAAAAACCACCACTATTGCACAAACATGGTTCATCTTAGTGTACAACGCCAACTCATCATCTCGA
CTTGCCTATGCAATGCAACGTGAAACAAAAGACACACATGCATCTCGCAGCATCAATCAATCCACGTACGTACACCCTCTCCGATCCGAAAGACAATGAA
GTTGCATAGCATAGCCGTTGAGCTTAGTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCATGCGTTGTTGTTGACTGGGTCAGCGATGTGGTCAGCGAGGT
TCTCGAGCGGGCCCTTGCCGGTAGCTCGGGGGCTCGCCGGAGAAGGGGCCGAGGTACTTGACGCGGTCGGGGCCGTACCAGGGGCTGCCGGACGCCGCCA
CCTTGGGCTTGCCCACGGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGAACCCACCTTGATGGGGGTGCCGGCCATCGCCGTGGAGGAGATCGCCAT
GGTGGAGGCAGCCATTGCTGAAGCTGAGCGTGAAAGTGTTGGACCGGTTGCTATAGATGCCGCTGGT