Detailed information on CNT30672099


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30450324Setaria viridisSaccharum spontaneum20.653.4593.4276reverse complement
CNT30135803Setaria viridisLolium perenne22.287.2685.3782forward

Expression of CNT30672099

Peptides detected in this lncRNA

>peptide 1 (72 aa)
QASLYFCKHTLVRRYTQQSKAWNMDGWSSINCSSPLDGVAAVVALLVGVSLPDHDAAVVGEEDRREGQEGGC*

>peptide 2 (33 aa)
MEHGWMELDQLLKPIGWRSCCSCSACRRIAPRS*

Sequence

>CNT30672099
ACAGGCCTCACTTTATTTTTGCAAGCACACGCTAGTGAGGAGATACACACAGCAGAGTAAGGCATGGAACATGGATGGATGGAGCTCGATCAACTGCTCA
AGCCCATTGGATGGCGTAGCTGCTGTAGTTGCTCTGCTTGTCGGCGTATCGCTCCCAGATCATGATGCCGCCGTAGTCGGCGAGGAGGACCGCCGCGAGG
GCCAGGAGGGAGGCTGCTAGCCTCCGGCGGCTTGCGAGCGCCATTGCTGATGGGTGATTGCTTCTTCTTCTTCTTCTTGCTTGTTTAGCTTCTTATATAG
TGTTGGATTGGGATTGGAAACTTGGAATATTGATTAGTGTGCTCATCTTGGTAGCTTGGAATTTGGAC