Detailed information on CNT30450324


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7GCM7|XIP1_ORYSJ, E-value = 4e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672099Saccharum spontaneumSetaria viridis3.4520.6593.4276reverse complement
CNT30135803Saccharum spontaneumLolium perenne10.272082.74226reverse complement
CNT30581043Saccharum spontaneumEchinochloa crusgalli11.4933.7388.54253reverse complement

Expression of CNT30450324

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MEMELRSSIKPIEWRSCCSWSACRRSGPRS*

>peptide 2 (62 aa)
MVTGTAPRTGSRSGTSGRRRSPTPGSTSGSRRRSRRSGTCTPRTSTTASSPWCRRRPTTAGS*

>peptide 3 (80 aa)
VSLYSCELASEMGNTTVGTHRDRQSRRHGWRWSSDHRSSPLNGVAAVVGPLVGEAVPDHDPAVVGRLLHHGDDAVVEVLW*

>peptide 4 (47 aa)
MGGVTFMTLNKYHYIYYKIYLHTKHQDIIDETLMLGSGHPGGRTHRW*

>peptide 5 (51 aa)
MGLIDDRARSLHPWRVLCLSLCVLTVVLPISSLACVCKNNKVRPCASINRW*

>peptide 6 (59 aa)
MTYHPIQDLSAIYFIHLRKRCNSHFPRNQRCFSLTKFVKKHCYSLRCLAFLDTYHLLYI*

Sequence

>CNT30450324
GTGTCACTTTATTCTTGCGAGCTCGCTAGTGAGATGGGCAACACTACAGTAGGTACACACAGAGACAGACAGAGTAGACGGCATGGATGGAGATGGAGCT
CCGATCATCGATCAAGCCCATTGAATGGCGTAGCTGCTGTAGTTGGTCCGCTTGTCGGCGAAGCGGTCCCAGATCATGATCCCGCCGTAGTTGGCCGCCT
TCTGCACCACGGGGACGACGCCGTAGTAGAGGTTTTATGGTGACGGGCACTGCGCCGCGTACTGGCAGCAGGAGTGGGACAAGTGGACGGCGGCGTTCCC
CGACTCCGGGATCTACGTCGGGCTCCCGGCGTCGGAGCAGACGGTCGGGTACGTGCACCCCAAGAACCTCTACTACGGCGTCGTCCCCGTGGTGCAGAAG
GCGGCCAACTACGGCGGGATCATGATCTGGGACCGCTACGCCGACAAGCGGAGCAACTACAGCAGCTACGCCATTCAATGGGCCTGATCGATGATCGAGC
TCGCTCGCTCCATCCATGGCGTGTACTCTGTCTGTCTCTGTGTGTACTTACTGTAGTGTTGCCCATCTCCTCACTAGCGTGCGTGTGCAAGAATAATAAA
GTGAGGCCTTGTGCATCAATAAACCGTTGGTAATTATCGTTAGTTTGATTATTATCTGCCCCGTCACTTTATTTCTCACTCTCTCAAGTGAGTTAGTATT
TTACACATCAAGATTTTACGGCCCTAATTTTTTAAGCCTTTTTAAAAAGATCCCATTATCTGGTTTATCTTTGAAATAAGAAACATAGTTTATAGAGATC
AGAGCATCTTACAAGTGCGAGGGACACTATACCTCACATAGCAGAAGGCTACACGAGGTTTAGATGAAAAATAACTAATTACTCACAAAAGGATGGGCAA
TCATTAGGGAAGTAAGGACTTTTCCTCCTGCCAACACCCAAGTGGAGCACTCTCCTCTTATCCCTATAAACACAAATTGCGTTGTTTTTCTGGCAATCCC
TGCAGATCACCACGTTTCTCTGCTTTCAAATGGATCATAACGTCAGGGTTGCTAAAGAGTGTGCCAACTTGGTGCCCCTCCATATCAGTCTCCCCGGACC
ACCTGGATGGGTGTAGGTTGCAACAATTGCTCCTGCTGGTTGCGGGAAAAGGGGGGCGAAAATGAAGTGAGTGGATGTTTTTAGGTTCCTTTCACACAGG
TGATATAGAAGTAGTTATTTTTCTAACTGCGTAGTTGAAGTCAGGTTGTTGTCCATAATCTATCCTACAAAAGCAGCCAAAGAAGGAATTTTCATCGCGG
CGTCGCCCAAACCTTCCAGATTAGCACTGCCCTAAATTTCGTCTCTTGTCTAGTATTACCCATAGTTTTATTTCTTGTTTCGTATATTTATAACACCTGG
TAACATTGCAAATTGTGAAAGTTATTTTTTTACAAAAATATACGTACTGTTTCTTGTTTTGAAATGGTAAGTATATTTGGATCATAAAAAGTCAAACAAA
ATAGATTTTAACCGTTGATTTCTCTTATATATATTATACAATTTGCAGAGACACTTTGAATATAAATGCGTTGGTGTAAGTTTTATGTGCCGAACTTGTA
TATAATTTTTAAACTTTGTATAAGTCAACTTTTCCGGTTTGAAATATGATCATCATTCTAGAAGGAAGGAAGACGGACGGGCATATGGATGAGAGTGCAC
ATGGCATATCATAAGACAAAAAAATGACTTACCATCCAATACAAGATCTCAGTGCTATTTACTTCATCCATCTCAGAAAAAGATGTAATTCTCATTTTCC
AAGAAATCAAAGGTGTTTTAGTTTGACTAAATTTGTAAAAAAACACTGCTACTCCCTTCGTTGTTTGGCTTTTCTAGATACATATCATTTACTATATATT
TAAGTATAGTATATATCTAAGTGCACAATAAAAACTATGTATCTTGAAAAGTCATAACGTCTTATAATTTGGAATGGGTGGAGTAACATTTATGACATTA
AATAAGTATCATTATATTTATTATAAAATATATTTGCATACAAAGCATCAAGACATAATTGATGAAACGCTAATGCTAGGAAGTGGGCATCCAGGCGGCC
GGACGCACCGTTGGTAGACCGCGCGACGCCAGCCCAAGACCTCCGCTCATCTGTCTCTAAATAAAAAATTAGCTCGTCCACGTACTCATTCCTATCCGCT
C