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Detailed information on CNT30135803


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7GCM7|XIP1_ORYSJ, E-value = 4e-94

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672099Lolium perenneSetaria viridis7.2622.2885.3782forward
CNT30450324Lolium perenneSaccharum spontaneum2010.2782.74226reverse complement
CNT30581043Lolium perenneEchinochloa crusgalli23.4535.3380265forward

Expression of CNT30135803

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MPAHFGYTVTAKRAWICSSSSSSRRLKPICWRSCCSRSACRRTFPRS*

>peptide 2 (33 aa)
MRVKSPVESARSTLRSGNRHRGVAVSCTGVLAR*

>peptide 3 (37 aa)
HDIKSSRCPSTPQHVLTATSHNPSTILLLKFISNSDN*

>peptide 4 (30 aa)
MERKTRMLLDWQYLMSAPTVETSWPERSRW*

Sequence

>CNT30135803
TTCATGATATTAAATCCAGTAGGTGTCCATCGACACCTCAGCATGTCCTGACCGCAACTTCACATAACCCGTCCACGATACTACTACTAAAATTCATTTC
GAACAGTGACAACTAAAGTGACTGAACATGTAAATACTCATTCCAGAGCGTAGATAACTGTTATTACTTGTTTATTCTCGCACATGCCTCAGTTTATTTT
TGCAAGCTCATGCCTGCACACTTTGGCTACACAGTGACAGCGAAACGTGCATGGATATGTAGTTCTAGCTCAAGCTCAAGGAGGCTCAAGCCCATTTGCT
GGCGAAGCTGCTGTAGCCGGTCCGCTTGTCGTCGTACCTTTCCCAGATCATGACGCCGCCGTAGTTGGCCGCGTTCTGCACCACCGAGAAAAGGCCGCCC
TGAAGATTCTTGGGGTGCACGTACCCAACCTTCTTCTCCCCCGCCGGCAGCCCGACGAAGATCTGCGCGGACGGGTACGCCGCCGTCCACTTGTTCCACT
CCTGCTGCCAGTATGCGGCGCAGTGGGCGTCGTCGTAGAACCTGACGAAGATGCGTGTGAAGAGCCCCGTGGAGAGCGCGCGCTCGACGCTCCGGTCCGG
GAACCGGCACCGCGGCGTCGCCGTCAGCTGCACGGGCGTCCTCGCGCGGTAGGCCTTGTTGAATTCGATGAGCCGCTTGGCGAGCTCGTCGTAGTTGTCC
GGCGCGCCGTTCTGGATGAAGAAATCGATGCCGTCCACGAAGGCGTTCCAGAGGTAGTTGGCGAAGTCCGCCGCCGCCTGGGGGCTGGGCAGGGAGTACT
GGTTGCCGAAGCCGCCGATGGAGAGGAAGACGAGGATGCTCTTGGACTGGCAGTACTTGATGTCGGCGCCGACGGTGGAGACGTCGTGGCCGGAGAGGTC
GAGGTGGTAGTTGCCGTGGCCGAAGACGTCGAGGAAGGAGATGACGGCGATGGTGTAGGTGCCGGTGTCGCAGGCCTCACGCAGGGAGCCCTCGTCCTTG
TTCCGGCCCCAGAAGACGGCCACCTGGCCGGAGGGCCCCGAGGAGGAGCATCACGGAGGCTGGCTTACAGCTTGCGATCGCCATCGGTGGTGGATGGATG
AGTTCTCTTCCTTGCTCGGCTTGTTGGTGT