Detailed information on CNT30670711


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30178786Setaria viridisSecale cereale29.6318.9182.03128forward
CNT30592972Setaria viridisEragrostis curvula24.3128.9394.29105forward

Expression of CNT30670711

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MEVFSPPVGSSAERQGLAVPLLEALEQRVDVLALVDGHQHLVQLLAGRPRLLAGEQ*

>peptide 2 (67 aa)
MLYFCFSCVWRCSLLLWAVQQSGRGSPFHSLRHSSSGSMCLRSLMATSTLFSSSPGDRVFSPVSSRD*

>peptide 3 (34 aa)
MVLKCYTFVFLVYGGVLSSCGQFSRAAGARRSTP*

Sequence

>CNT30670711
GGCGTCTCAGCACCGGGAACACAACAACATTCACATGAACTTTTAGCTACAAGGGAACGGTAAAATATAGAGAGTATCATCAGCTAGACTGATCGTAAAA
CTTCACAATGGTCTTGAAATGCTATACTTTTGTTTTTCTTGTGTATGGAGGTGTTCTCTCCTCCTGTGGGCAGTTCAGCAGAGCGGCAGGGGCTCGCCGT
TCCACTCCTTGAGGCACTCGAGCAGCGGGTCGATGTGCTTGCGCTCGTTGATGGCCACCAGCACCTTGTTCAGCTCCTCGCCGGGCGACCGCGTCTTCTC
GCCGGTGAGCAGTAGAGACTAGTAGTTGGGGGAACACAACAAGAGGAGTAATGCTACTAGCGTATTATTAGTATAGCTAATTGCGTGACTGTGTTGTAGA
AGAAGAGCTTGTGGAAACCCAGGCTCTTCCTG