Detailed information on CNT3066683


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30363908Leersia perrieriSorghum bicolor11.1334.5497.6786forward
CNT3099607Leersia perrieriOryza rufipogon24.0623.1189.78186forward

Expression of CNT3066683

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MKRENSRWCGGVHCCGLGQNTILVVALWLIWLWGAGESHIFRFVQVQQCFETSFSLPVCFGTCHAYW*

>peptide 2 (29 aa)
MHTGDWTCASWWCACFWSMATALIGSSFP*

>peptide 3 (41 aa)
THDPISCYRSCYCYYHSQKSSEIHMETRPWSMASSIRISYV*

>peptide 4 (43 aa)
MVWWRALLWTRTKYDPSSSSLVDLVVGSWGISHLSVRASATVF*

>peptide 5 (66 aa)
APMTPSRATEAATATTTHKNPPRSTWKLVHGPWLAPSESPTFEASCCMFQACCFRFLIVSVFRFLI*

Sequence

>CNT3066683
GCACCCATGACCCCATCTCGTGCTACAGAAGCTGCTACTGCTACTACCACTCACAAAAATCCTCCGAGATCCACATGGAAACTCGTCCATGGTCCATGGC
TAGCTCCATCAGAATCTCCTACGTTTGAGGCTAGCTGTTGCATGTTTCAAGCTTGCTGCTTCCGTTTCTTAATTGTTTCAGTTTTTCGTTTCTTGATCTG
ATCTTGCTACCTATCTATCTCATGTTCACCTTCATGGAAGTGATGGATGGAAGAGAGCGTCCTTCAGTCCACTCATGGGCGTTGCTAGGGTCGAATTAGC
TGCCGACTCATTCACCCACATGCCAAGCAAGAACACAGCTTGTGAGCTTAGCAGATGAGTGAATGAAGCGGGAGAATTCGAGATGGTGTGGTGGCGTGCA
CTGTTGTGGACTAGGACAAAATACGATCCTAGTAGTAGCTCTCTGGTTGATCTGGTTGTGGGGAGCTGGGGAATCTCACATCTTTCGGTTCGTGCAAGTG
CAACAGTGTTTTGAGACGTCTTTCAGTCTCCCTGTTTGCTTTGGAACTTGTCATGCATACTGGTGATTGGACGTGTGCTAGCTGGTGGTGTGCTTGCTTT
TGGAGCATGGCCACCGCTCTGATTGGATCAAGCTTCCCATGAGCTAGAGAAACTTTTTTTTCTCTTGGGCCCAAAGCAAGTTGTTTTCATGCAGCCCCAA
AGGGTCAGGGTTAATTAAGGCTGATTAATTACTTTACTCTTTGGTGAGATTTGTGATGTGTAGAGGTGTTTTA